Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value SEQ17778 159 6e-34 >SEQ17778 Length=11298 Score = 159 bits (176), Expect = 6e-34 Identities = 217/299 (73%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 || |||||| || | ||| ||||| |||| | || || ||||||||| | ||| | || Sbjct 3964 CTTTGGAACTCGGCGCAATTGCAGCTGGTCAATGAGGGCAAAATGCATGGATTTCTGAGA 4023 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA--AGACGCTTTGAGTT 189566 ||||||||||| |||||||||||||||||||| |||||| || || ||| | ||| | Sbjct 4024 ATGTATTGGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGC-TGGAG-T 4081 Query 189567 ATAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAG 189626 |||| || | ||||| |||| ||| || || ||| ||||| ||||| || || | Sbjct 4082 ATAGCATATTGCTGAACGACAAATACAGTCTGGATGGCCGCGATCCCAACGGTTATGTGG 4141 Query 189627 GTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTG 189686 | || ||||||||| | | || | || |||| || ||||| || | | ||||| | Sbjct 4142 GCTGCATGTGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCTATATTCG 4201 Query 189687 GAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTATTT 189745 | ||||| | |||||||| ||| || | | ||| |||||||||||| || |||| Sbjct 4202 GCAAGATTCGCTATATGAACTATCAGGGATGTAAACGAAAATTTGATGTTAATGCATTT 4260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922664750144200