Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 159 3e-34
>seq2872
Length=9359
Score = 159 bits (176), Expect = 3e-34
Identities = 573/892 (64%), Gaps = 8/892 (1%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||||| | ||||||||| || ||| || ||||| |||
Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|||||||||| ||| |||| || ||||| || ||||| || || || || || | |
Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AAT 16063
|||| || || ||||| |||| || || | | || |||| |||| |||
Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAA-ATCTTGCCCACTCCAAGCTCAACCAAT 3106
Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123
| | ||| || ||||| || ||||| | ||| | | |||||||||| || || ||
Sbjct 3107 AGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAG 3166
Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183
|| || || | || || || | || | | || ||| | || || || | || ||
Sbjct 3167 TTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATT 3226
Query 16184 TCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240
|| | | | | | | | || | | | || |||| ||||| | |||
Sbjct 3227 TCAATGATGCGTTCCCGACTA---GGCCGCTGCACCAAATGTTGGAACATAAGCACCGCA 3283
Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300
|| |||||||||| ||||| || | | || || ||||| || |||||||| || |||
Sbjct 3284 AAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGC 3343
Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360
|| ||||| || || || | ||| || || | ||||| ||| ||||| || |||
Sbjct 3344 ATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCT 3403
Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420
||||| || ||||| |||| | || ||||| | | | || |||||
Sbjct 3404 TCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAA 3463
Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480
|||||| | ||| || | |||||| ||| | || || ||||| || | |
Sbjct 3464 GAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 3523
Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540
|| | | | | ||| ||||| || || || || | ||| |||||||| |||
Sbjct 3524 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 3583
Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600
|| | ||||||||| || ||||| || ||||||||||| | || |||| | || |||
Sbjct 3584 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 3643
Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660
|| | ||| | ||| | | ||||||||||| |||||||| ||| ||||| ||
Sbjct 3644 TCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAG 3703
Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAA 16720
|| | | || || |||| || ||||| | ||| || ||| |||| |
Sbjct 3704 GCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATG 3763
Query 16721 TCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772
|| || || | ||| || ||||| || ||||| || || || |||||| ||
Sbjct 3764 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462245448553000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |