Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2872 159 3e-34 >seq2872 Length=9359 Score = 159 bits (176), Expect = 3e-34 Identities = 573/892 (64%), Gaps = 8/892 (1%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | ||||||||| || ||| || ||||| ||| Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| ||| |||| || ||||| || ||||| || || || || || | | Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC-AAT 16063 |||| || || ||||| |||| || || | | || |||| |||| ||| Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAA-ATCTTGCCCACTCCAAGCTCAACCAAT 3106 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | | ||| || ||||| || ||||| | ||| | | |||||||||| || || || Sbjct 3107 AGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAG 3166 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 || || || | || || || | || | | || ||| | || || || | || || Sbjct 3167 TTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATT 3226 Query 16184 TCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 || | | | | | | | || | | | || |||| ||||| | ||| Sbjct 3227 TCAATGATGCGTTCCCGACTA---GGCCGCTGCACCAAATGTTGGAACATAAGCACCGCA 3283 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 || |||||||||| ||||| || | | || || ||||| || |||||||| || ||| Sbjct 3284 AAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGC 3343 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||| || || || | ||| || || | ||||| ||| ||||| || ||| Sbjct 3344 ATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCT 3403 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 ||||| || ||||| |||| | || ||||| | | | || ||||| Sbjct 3404 TCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAA 3463 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 |||||| | ||| || | |||||| ||| | || || ||||| || | | Sbjct 3464 GAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 3523 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 || | | | | ||| ||||| || || || || | ||| |||||||| ||| Sbjct 3524 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 3583 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || | ||||||||| || ||||| || ||||||||||| | || |||| | || ||| Sbjct 3584 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 3643 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | ||| | ||| | | ||||||||||| |||||||| ||| ||||| || Sbjct 3644 TCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAG 3703 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAA 16720 || | | || || |||| || ||||| | ||| || ||| |||| | Sbjct 3704 GCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATG 3763 Query 16721 TCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || || || | ||| || ||||| || ||||| || || || |||||| || Sbjct 3764 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462245448553000