Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq61 500 8e-137 seq2872 288 9e-73 seq4710 95.1 1e-14 seq4983 87.8 2e-12 >seq61 Length=55249 Score = 500 bits (554), Expect = 8e-137 Identities = 1246/1881 (66%), Gaps = 59/1881 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||| ||||| || || || || || || || || || ||||| ||||||||||| || Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| || || |||||||| | | ||||| || || || || || || || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | | || | ||||| || |||||||| || ||||| || || ||||| || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || || || ||| |||||||| ||||| ||||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTCC 27769 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 || || |||||||| | || | ||| || | || ||||| ||| || || Sbjct 27768 TGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCATG 27709 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 ||| | ||| ||| | | |||| ||||| | || |||| | || ||||| | Sbjct 27708 TCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTG 27649 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| |||||||| ||||| | ||||||||| || || |||| || || || ||| Sbjct 27648 AACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCA 27589 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 || || |||| ||||| || || || || || ||||| || || | || ||||||||| Sbjct 27588 TTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAGCAGCGAGTTT 27529 Query 22586 CTCAAGCCGTG--CTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 || | ||| || |||||| || | | | ||||| | ||| ||||| || | | Sbjct 27528 CTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCA--GTCCAATCCCAAAGGCTTGTGG 27471 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | ||| ||||||||||||||||| |||| | || ||| |||| | || ||| Sbjct 27470 GTGTC---TTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGT 27414 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | ||||| || ||||| | | || || || || || ||||| | || || || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 22764 ATATAGTCTCGAAGATTTTC---TTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 | || || |||||||| | | ||| |||| |||| | | || || || || | Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAAT---ACGGCTTTGTCACTCTCATAGGGAA 27297 Query 22821 TACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT 22880 |||||||| | || ||||| || | ||||||||||| || || || || || | | Sbjct 27296 AACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTC 27237 Query 22881 TCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCA 22940 | | ||| || ||||||||||||| ||||| |||| ||| || || |||||| Sbjct 27236 TTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCA 27177 Query 22941 AGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT- 22999 | |||||||| ||| |||| || | | || ||| || | | Sbjct 27176 AATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCG--AATGTTTTCTC 27119 Query 23000 TGTA-CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 || | |||||| | || | ||| ||||| || | |||||| ||||| | ||| || Sbjct 27118 TGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGG 27059 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | || || || |||||||| || || || ||||| || || || ||||| | ||| Sbjct 27058 TGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTG 26999 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||| ||||| || | ||||| || |||||| ||||||||||||| ||||| ||||| || Sbjct 26998 CTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAAC 26939 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGA---ACACG--TCGCACGTAC 23233 || || || | || || ||| | ||| || || | | ||||| | || || | Sbjct 26938 TTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACC 26879 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 || || |||||||||| |||| | ||||| || | || || ||| || Sbjct 26878 CTCGCT-----CTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCC 26824 Query 23294 AGGCCGGGCGATTGCATCGGACACATGAG-----ACTCCACATTGAGTCATTTTCAACGC 23348 | |||||| | | ||||||| || | ||| ||||| | | || || | Sbjct 26823 AAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTG-GCC----TCCACAC 26769 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 | ||||||| ||||| |||||||| | |||||||| || || || || | ||| | Sbjct 26768 GCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTT 26709 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | ||||| ||||||||||| | ||||| || || || | || | |||||| || || | Sbjct 26708 CCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCA 26649 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||||| |||||| ||||| |||| ||| ||| || |||||||| ||||| ||| | Sbjct 26648 GGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACAT 26589 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA- 23587 | || ||||||| ||||| ||||| | ||| || || | ||| | |||||| Sbjct 26588 TATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCC----ATTAGTGCCACAG 26533 Query 23588 CTCGA---ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 |||| || || || |||| || || | || || ||||| || | ||||| Sbjct 26532 ATCGAGGTGCCCTTGGCACGAATACAATGCACATTGAGCCCAATGCCACCAGCGGATTTG 26473 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG----CTGTCCTCTTT 23700 || ||||| || || || | | | | | | ||||| |||||| | | | || Sbjct 26472 GAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATT 26413 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCG---CTTTGGGCGTAGCGGCCGAGAACAG 23757 | | | | ||||||||| ||||| || | |||| | ||| || | ||| Sbjct 26412 GTT----AAAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAAC-- 26359 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817 || || || |||||||| || | | ||| | |||||||| || |||| |||| Sbjct 26358 -GTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGA 26300 Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 ||| ||||| || || || || || || || || | ||||| ||||| || || | || Sbjct 26299 ATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTC 26240 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | | ||| || || || | || ||| ||||| | | || || || |||||||| Sbjct 26239 GGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATA 26180 Query 23938 GTCATAGTTAAAGTCACGATC 23958 || ||| ||| |||||||| Sbjct 26179 GTTGTAGCCAAAATCACGATC 26159 >seq2872 Length=9359 Score = 288 bits (318), Expect = 9e-73 Identities = 571/839 (68%), Gaps = 26/839 (3%) Strand=Plus/Minus Query 57586 AAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCG 57645 || |||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||| | Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756 Query 57646 ATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCG 57705 |||||| || | || |||| | |||| || || |||||||| || || | Sbjct 3755 ATTGGGCCAAGCTTACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTTG 3696 Query 57706 CCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAG 57765 | || || ||||| ||||||||||| ||| |||||||| | ||| ||||||||||| | Sbjct 3695 CTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGCAGG 3636 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 |||| ||||| | |||||||| || || || | ||||| || || |||||||| |||| Sbjct 3635 TGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAAA 3576 Query 57826 TGTATTCGCTACTCATCGATACGTACGTGAAGGA----CAACGACGAGAAACGTAGACTG 57881 |||| | ||||| || || || | | ||| || | ||||| || || Sbjct 3575 TGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGA---CTA-TCTC 3520 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941 ||||| || || ||||| ||||| || | ||||||||| ||| | | ||| Sbjct 3519 TTCAATGCCATTGAAACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGG 3460 Query 57942 A----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 | | ||| | |||| || | || | | || || || || || || || Sbjct 3459 ATCTCTTCGAAG----GCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTGA 3404 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || ||||| || |||||||| | || || ||| ||||||| || || || || Sbjct 3403 AGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTAT 3344 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || || || || |||||| ||||| || ||||| || ||||| ||| ||| || Sbjct 3343 GCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTT 3284 Query 58118 TGCGTGCCTAATGTACTCTCACATT--GTCAATAAACCGACGCGGGATCGCATCTTGGAC 58175 |||| || |||| || ||||| || | || | ||||| |||||| | || Sbjct 3283 TGCGGTGCTTATGT--TCCAACATTTGGTGCAGCGGCCTAGTCGGGAACGCATCATTGAA 3226 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || || || || || || | || || | ||||| ||||||| || || || || | Sbjct 3225 ATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAAC 3166 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 || | || |||||| || | ||||||| | || || |||||||| || || | || Sbjct 3165 TTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTA 3106 Query 58296 TTGCTCGAACTGATTGGAGAGCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATG 58352 ||| | || | |||||| | | | ||||||||| || ||||| || || ||| Sbjct 3105 TTGGTTGA---GCTTGGAGTGGGCAAGATTTACAACACAAAGAATCCATTCTCGTTCATG 3049 Query 58353 AATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCA 58411 | ||||||| | || ||||| || ||||| ||||| || ||||| | |||||||| Sbjct 3048 GAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGTGGGTGAATATCA 2990 >seq4710 Length=78879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| ||||| || || || |||||| | || || || Sbjct 8835 TCAAA-ATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAG 8777 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || || | | || | || || | || ||||||||||| | || || Sbjct 8776 CCATCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCA 8717 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || ||||||||||| || ||||||||||| ||| |||| || | ||| || || Sbjct 8716 GATCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGAC 8657 Query 31367 TATAACATTCAAAAAGAATCGACTCTT-CATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| ||| || |||| || | ||| | || |||| Sbjct 8656 TACAACATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGGTA 8601 >seq4983 Length=3163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || |||||||| |||| ||||| || || ||| | || ||||| || Sbjct 874 AAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCC 815 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||| | ||||| | || ||||||||| || | || || || Sbjct 814 CTCTGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 755 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| | || ||||| || || ||||||||||| | || | ||| || Sbjct 754 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACTA 695 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||| |||| || Sbjct 694 CAACATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445509499251600