Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq61 462 3e-125 seq2872 291 1e-73 >seq61 Length=55249 Score = 462 bits (512), Expect = 3e-125 Identities = 1236/1871 (66%), Gaps = 30/1871 (2%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 62276 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 | |||| | || | | || || ||||| |||| | | || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||||| |||||| | | ||||||||| | | | | ||| | || || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 ||| ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 62511 |||||| |||| || || ||||| ||||| || ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 62512 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 |||||| || ||| ||| |||||| ||||||| ||||| |||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628 ||| || || ||||| || || || | | || | || | | Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 | || ||||| || || ||||| | ||| || | |||||| ||||| | ||||| || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 | |||||||| ||||||| || ||| || | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 62869 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62925 ||||| ||| || || || ||||||||||| ||||| ||| ||| Sbjct 27173 TTCTGGTGACAGTT---TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTG 27117 Query 62926 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | Sbjct 27116 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 27057 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 ||| ||||| | || |||||||| || || || || ||||| || || | ||| || | Sbjct 27056 CCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 26997 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 |||| ||||| |||| || | ||||| | || ||| | ||||| ||||| |||| | Sbjct 26996 GATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 26937 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTT 63161 ||||||| | ||| || | ||| | | | || || || | | |||||| || | Sbjct 26936 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 26877 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 | || ||||| ||||||| || || || || |||||||| | ||||| | Sbjct 26876 -CGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 26818 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| | | ||||||| || |||||| || | | ||| ||| || |||||||| Sbjct 26817 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAAC 26758 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 26757 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 26698 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| Sbjct 26697 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 26638 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | || || || ||| || || ||||| | || | ||| |||||| | ||| Sbjct 26637 AAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 26578 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 || | ||| || | | ||| ||||| | ||||| || || |||| || || || Sbjct 26577 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 26518 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 26517 GCACGAATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 26460 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAA 63638 | | | | | | | |||||||| ||| ||| | || |||||| || ||| Sbjct 26459 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAA-AAGGAAA 26401 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || ||||| ||| ||||| | || | ||| |||||| || || || || |||||| Sbjct 26400 CACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTA 26341 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | ||| || | |||||||| ||||| | ||| || || || || ||| Sbjct 26340 AAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGG 26281 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 ||||| | || || | ||| | ||||||||| || | ||| | |||||| || || Sbjct 26280 ATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATC 26221 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 || | ||| || || || | || || || |||||||||||||| ||| || || Sbjct 26220 TTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGA 26161 Query 63879 TCGTAAATAAT 63889 || || || || Sbjct 26160 TCATAGATGAT 26150 >seq2872 Length=9359 Score = 291 bits (322), Expect = 1e-73 Identities = 604/892 (68%), Gaps = 14/892 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 || ||||||||||| || ||||| || || ||||| || ||||| || || | | Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 ||||||| || ||||| | |||||||| || | ||| | ||| | || Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCA---ACCA 3104 Query 33412 AT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 || | ||| ||||| || || |||||| ||||| |||| ||||| || || | Sbjct 3105 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 3164 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || || || || || | || || || || || ||||| | || |||| ||||| | Sbjct 3165 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGA 3224 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT-GCG 33587 | | | | ||| ||| || | || | ||||||| ||||| || || || Sbjct 3225 TTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCA 3283 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || || |||||||| || || | | || |||||||| || || || ||||| ||| Sbjct 3284 AAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGC 3343 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || || |||||||| || ||||| || ||||| || || || |||||||| ||| Sbjct 3344 ATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCT 3403 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC--ATGTATCCAC 33764 || || |||||||| ||||||| | || ||| | ||| || || | ||||| Sbjct 3404 TCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAA 3463 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||||||| || |||||| || ||| ||||||||||| |||||||| |||||| Sbjct 3464 GAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGA 3523 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 |||| | | || | ||| | | ||| || || || | | ||| |||||||| ||| Sbjct 3524 TAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAA 3583 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || | || || ||||| ||||| || || || || || | |||||||| | ||||||| Sbjct 3584 TGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACT 3643 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | ||| ||||| | | |||||| || || ||||||||| || ||||| || Sbjct 3644 TCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAG 3703 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 ||||| ||||| ||| |||| || | || || || ||||||| | || Sbjct 3704 GCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCATG 3763 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 3764 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629454628244400