Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq61 196 5e-45 >seq61 Length=55249 Score = 196 bits (216), Expect = 5e-45 Identities = 781/1216 (64%), Gaps = 15/1216 (1%) Strand=Plus/Minus Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGA 37131 |||||| ||||||| || ||| | || ||| || ||| || | ||| | || || Sbjct 27718 ATTCTTCATGTCATCATCCCATAAAT--CTAGTTCGGTTAAATCCCGCAACAAATGATGA 27661 Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 ||||| || | || ||||| || || || | || || || || || |||||| || Sbjct 27660 TTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGC 27601 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 |||| |||||||||||||| | || || | |||||||| || |||||||| |||| Sbjct 27600 TCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACA 27541 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCAT 37311 || || ||||| | ||||| || ||| || |||||| || |||||||||| Sbjct 27540 AGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCA- 27482 Query 37312 AAATCTGTTGGGT-TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGA 37370 || || ||||| |||| ||||||||| || || ||||| || || ||| | ||| | Sbjct 27481 AAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACA 27422 Query 37371 ATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGC 37430 | | || || ||||| || |||| ||| ||| || || ||||| | || || || Sbjct 27421 ACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGC 27362 Query 37431 GGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAA 37490 |||| || || |||||||| || || ||| | | | |||| || || || | Sbjct 27361 ACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATA 27302 Query 37491 TGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCT 37550 | | | | || | || || | || || || |||||||| || || || ||||| | Sbjct 27301 GGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACG 27242 Query 37551 ATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 |||| | ||| ||| | | || || ||||| ||||||||||| || ||||| Sbjct 27241 ATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTT 27182 Query 37611 ATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTT 37670 || | |||| | | |||| |||| | ||| || | ||| ||| || Sbjct 27181 GTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTT 27122 Query 37671 AT---TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATC 37727 | | | ||||| || |||| | || ||| | | ||| || || |||| ||||| Sbjct 27121 CTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATC 27062 Query 37728 TTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAAT 37786 || | || ||| | ||| || || ||||| || || || | || || || | || Sbjct 27061 -GGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACAT 27003 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | |||||| || | || ||||| || || | || || ||||| || || | Sbjct 27002 TCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCT 26943 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA-CGATCGCTTTAAtt 37905 | | ||||| || | ||| | | ||| | | || |||||||| | || ||| Sbjct 26942 CAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTT-GCG 26884 Query 37906 tttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT 37965 || | ||||| | | |||| | || | ||| |||| |||||| || || Sbjct 26883 CGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCC 26824 Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || ||||| | | ||||||| || ||||| || |||| || || || | | Sbjct 26823 AAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTC 26764 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||||| | ||| |||| ||| || || ||| || | ||| | ||| | ||||| || Sbjct 26763 ATAAACAGATCGGGTATCCACAAGGC-GTAGAAGAGATCACGAGCTCTGTGCTCTTCCTT 26705 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || |||||| | | | | || || || ||||| | ||||| ||||| | || Sbjct 26704 GCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTA 26645 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || ||||||| || | || || |||| | ||| | | | ||||| Sbjct 26644 AATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATT 26585 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | | ||| | ||| || || | |||||| || |||| || | || | || | || Sbjct 26584 AAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGT 26525 Query 38265 ACCCTTAGCTCGTATA 38280 ||||| || || ||| Sbjct 26524 GCCCTTGGCACGAATA 26509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468254783301200