Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq61 479 4e-130 seq2872 284 2e-71 >seq61 Length=55249 Score = 479 bits (530), Expect = 4e-130 Identities = 1263/1911 (66%), Gaps = 34/1911 (2%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 65068 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 65069 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 ||||||| |||||| | | ||||||||| | | | | ||| |||| || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 65304 |||||| |||| || || ||||| ||||| || ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 65305 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 65362 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 65421 ||| || ||||| || || || | | || | || | | Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 65541 | |||||||||||||||| || ||| || | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 65542 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 65601 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 65602 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 65661 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 65662 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA 65718 ||||| ||| || || || ||||||||||| ||||| ||| | ||| Sbjct 27173 TTCTGGTGACAGTT---TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTG 27117 Query 65719 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | Sbjct 27116 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 27057 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 ||| ||||| | || |||||||| || || || || |||||||| || | ||| || | Sbjct 27056 CCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 26997 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 |||| ||||| |||| || | ||||| | || ||| | ||||| ||||| |||| | Sbjct 26996 GATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 26937 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTT 65954 ||||||| | ||| || | ||| | | | || || || | | |||||| | | Sbjct 26936 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 26877 Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 | || ||||| |||||||| || || || || |||||||| | ||||| || Sbjct 26876 -CGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 26818 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 ||||| | | ||||||| || |||||| || | | ||| ||| || |||||||| Sbjct 26817 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAAC 26758 Query 66075 AGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 ||||| || ||||| | || || | ||| | | ||| || || || || || || Sbjct 26757 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 26698 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 |||||||| || || | |||| | | ||||| ||||||| ||||||| ||| ||||| Sbjct 26697 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 26638 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | | | || || || ||| || || ||||| | || | ||| |||||| | ||| Sbjct 26637 AAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 26578 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 || | ||| || | | |||||| || || ||||| || || |||| || | || | Sbjct 26577 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 26518 Query 66315 GCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 ||||||||| | | ||||| | || || || || || ||| ||||| | ||| | Sbjct 26517 GCACGAATACAATGCACATTGA--GCCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 26460 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAA 66429 | | | | | | | ||||| || || ||| | |||| |||||| || | Sbjct 26459 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTTAAA-AGGA 26403 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| ||||| ||| ||||| | || | ||| |||||| || || || || |||| Sbjct 26402 AACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCG 26343 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | ||| || | |||||||| ||||| | ||| || || || || || Sbjct 26342 TAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCAT 26283 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || | Sbjct 26282 GGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGA 26223 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 | || | ||| || || || | || || || |||||||||||||| ||| || | Sbjct 26222 TCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCAC 26163 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 66720 | || || || || | ||||| || ||| | ||| ||||| |||| Sbjct 26162 GATCATAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 26112 >seq2872 Length=9359 Score = 284 bits (314), Expect = 2e-71 Identities = 606/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||||||||| |||||| | ||| |||||| || || |||||||||| Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 || ||||||||||| || ||||| || || ||||| || || || || || | | Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 ||||||| ||||||||| | || ||||| || | ||| | ||| | || Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCA---ACCA 3104 Query 35988 AT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 || | ||| |||||||| || |||||| ||||| |||| ||||| || || | Sbjct 3105 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 3164 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 || || || || || | || || || || || ||||||| || || || ||||| Sbjct 3165 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT-- 3222 Query 36105 TAGATATTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 36160 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 3223 --GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCAC 3279 Query 36161 -GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 || || || || || ||||| || || | | || ||||||||||| || || ||||| Sbjct 3280 CGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCC 3339 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||| || |||||||| || ||||| || ||||| ||||| ||| ||||| || Sbjct 3340 AGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGAT 3399 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTC--ATGTAT 36336 ||||| || || ||||| ||||||| | || ||| | |||| | || | || Sbjct 3400 GCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGAT 3459 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| ||||||| || |||||| || ||| ||||| || || || ||||| || Sbjct 3460 CCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAA 3519 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||||||| | | || | ||| | | ||| || ||||| | | ||| |||||||| Sbjct 3520 GAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTC 3579 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 ||||| | || || ||||| || || || || || || || | |||||||| | ||| Sbjct 3580 GGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTG 3639 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 |||||| | ||| ||||| | | |||||| || || ||||| ||| || ||||| Sbjct 3640 CACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAA 3699 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || ||||| ||||| ||| |||| || || || || || ||||||| | Sbjct 3700 GAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGT 3759 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 || || || || | |||||||||||| || ||||| || ||||| || |||| || Sbjct 3760 CATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657793486788200