Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3808 143 2e-29 SEQ36764 91.5 1e-13 >seq3808 Length=15542 Score = 143 bits (158), Expect = 2e-29 Identities = 266/387 (69%), Gaps = 14/387 (4%) Strand=Plus/Minus Query 20958 TCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATAC 21017 || |||| |||||| |||||||| || || ||| || || || || || |||| || Sbjct 5897 TCTCCCATGGTGTGGACAAAGTCACCAGGCTTCAATCCGGTCACATGGGCAATCATGTAG 5838 Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 || || || || || |||||||||||| || |||||||| |||||||| || | | Sbjct 5837 GTGAGCAGCGCATAAGAGGCGATGTTAAAAGGAACCCCGAGCCCCATGTCTGCACTTCGC 5778 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGA------GCCACGTAAAACTGACACAAAAC- 21130 |||||||| || ||||| || || || ||| | ||| || ||||| ||| || | Sbjct 5777 TGGTACAGATGACAGGAGAGTTCTCCTCGAGATTGCGACACATAGAACTG-CACCAAGCA 5719 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 ||| |||||||| || ||||| | | ||| ||| |||||||| |||||| ||| Sbjct 5718 GTGGCAAGGAGGCAGTGCCATTTTGGGTATATCCAAGGGATTCCACGCCGACATAATGAT 5659 Query 21191 GCGCCGATCGTGGGGCCGCCTGTT---AATTAGATCCACCACGTAACGCAGCTGGTCCAC 21247 || ||||| || | |||| ||| ||| | ||| | ||||||| || | Sbjct 5658 ACGACGATCCGAGG---GATTGTTTCGAATCGTATCAATCACTTGCTGCAGCTGATCGAT 5602 Query 21248 CCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTG 21307 || || || ||||| | ||| | ||||| || |||||||| | |||||| Sbjct 5601 GCCTTGTCCGCTGTAGTCATCATCGCAGGTGCGATACTCGGCTCCAAAATGACGCCACTG 5542 Query 21308 GAACCCGTACACCGGCCCCAGATCGCC 21334 || ||||| ||||| |||||||| || Sbjct 5541 AAAGCCGTAGACCGGACCCAGATCCCC 5515 >SEQ36764 Length=622 Score = 91.5 bits (100), Expect = 1e-13 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 20912 CAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTG 20971 |||||| ||| ||| | || | |||| ||| ||| | |||| ||| || ||| Sbjct 235 CAGCTGCAGCCGCACCTGGTCGAGGTGGATGTCGTAGATGTGGCAGTCGCCGCCGGTCCA 294 Query 20972 CACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTA 21031 ||| | || || |||||||| || |||| || | ||| | || ||||| Sbjct 295 CACGCACTCGCCGACCTCCAGGCCCGCCTGCTGGGCGAACATGTGGGTCCGCAGCGCGTA 354 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 | ||||||||| ||||| || |||||| |||||| ||| | |||||| |||||||| Sbjct 355 GGAGGCGATGTTGAACGGCACGCCGAGGAACATGTCCGCGCTGCGCTGGTAGAGCTGGCA 414 Query 21092 GGACAGC-TCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCA 21150 ||||||| |||| || || ||||| | ||| ||| | ||| || || || || |||| Sbjct 415 GGACAGCGTCCCGTCG-GCGACGTAGAGCTGGAACAGCAGGTGGCACGGGGGCAGCGCCA 473 Query 21151 TCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 | |||| || | | | |||||||| Sbjct 474 TATTGTCGAGCTCGGAGACGATCCACGCG 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427535630660400