Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq61 174 2e-38 SEQ10860 102 8e-17 seq4710 87.8 2e-12 >seq61 Length=55249 Score = 174 bits (192), Expect = 2e-38 Identities = 692/1073 (64%), Gaps = 56/1073 (5%) Strand=Plus/Minus Query 153127 ACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 153186 |||| ||||| ||||| || ||| | || || || || | ||||| ||||| | Sbjct 27605 ACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAG 27546 Query 153187 CCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAG 153245 | ||||||| ||| || | | || || | || | || ||||||| | || ||| Sbjct 27545 CTACAAGCAGCGAGTTTCTAACGCCATGCTCTT------TGATTTTCAATTTTAGAGCAG 27492 Query 153246 TCCCATAACGAAG-----TAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGC 153300 ||| || | ||| | ||| || | ||||| |||||| |||| || || | || Sbjct 27491 TCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGC 27432 Query 153301 TAGCTTTGCTACCGGCAAACGTGCTATACGGCTCACTGTCA----GACGCCAGTTTCAAA 153356 | | | ||| || | || ||| || || ||| || ||||| | || Sbjct 27431 TCACCGGACAACCAGCGTAGGTTTCATAGGG---ACCGTCCTTTTGA-GCCAGCTCACAA 27376 Query 153357 CTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCA 153416 ||||| || || || ||| || | |||||| | ||||| | || || || ||||| Sbjct 27375 CTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCT 27316 Query 153417 GCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCA 153476 || ||| | || || | |||| || | || || ||||| || || |||| |||| Sbjct 27315 TTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCA 27256 Query 153477 ATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTG 153536 ||||| ||||||||||| | | ||| ||||| ||||| | | |||||| ||||| Sbjct 27255 ATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTG 27196 Query 153537 CGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGA 153596 || || ||||| || ||| | | |||| ||| || | | ||||| Sbjct 27195 ATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACT---TCCTTCAGTTTC 27139 Query 153597 ---AAATCAAACGTT--CCATTAA-TGATATATTTGTTGACGGCAATCGACGCCAAGTTG 153650 ||||| || ||| | | || | | | | | || | ||| ||||| ||||| ||| Sbjct 27138 TTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATTG 27079 Query 153651 CAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 153710 || |||||| | || ||||| || |||||| || ||||| | || | ||||||||| Sbjct 27078 CAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCAT 27019 Query 153711 TTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATG 153770 || || ||| ||| |||||||| || | ||| |||| ||||||| | |||||| Sbjct 27018 TTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATG 26959 Query 153771 TATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAG--TACGCATCAATGTG------- 153821 || || ||||| || || ||||| ||| | ||| | ||| | | | || Sbjct 26958 TACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTA 26899 Query 153822 ACCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACCAGTATTCA 153881 | | | | ||||| ||||| |||| | ||||| | | | ||| | ||| Sbjct 26898 ATCACACG-ATTTG--CGCGA------CCCTCGCTCTCGTACTTTGTATACAGCTTCTCA 26848 Query 153882 AACTCAT--CACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACC 153939 || |||| | |||||||| || |||| ||||||| | || ||||||| ||| |||| Sbjct 26847 AAGTCATCCCCCCAAACGTCTT-CCAAGC-CGGGACACTTGTGAGGACACAACAGCGACC 26790 Query 153940 ATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCA 153999 | |||| | | || || |||||| | |||||| | ||| | ||||| | | Sbjct 26789 AATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGA 26730 Query 154000 GGTCGCGCGCTTTCGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATT 154058 | || || ||| | ||| ||||| |||| |||| | || |||| || | Sbjct 26729 GATCACGAGCTCT-GTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAG 26671 Query 154059 ATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG---CCC 154115 || ||| ||||||| ||||||| ||||| || ||||||| ||||||||| || Sbjct 26670 ATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCT 26611 Query 154116 TGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACC 154168 |||| || | ||| ||| ||| || || || | |||||||| | || ||| Sbjct 26610 TGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACC 26558 >SEQ10860 Length=7223 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||||||||| || || |||||| | |||| | ||||| Sbjct 1472 ACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCC 1531 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || || ||| |||||| ||| || ||||| ||||| || ||||||||||| || Sbjct 1532 AATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC-CTG 1590 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 1591 AATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1650 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| ||||| |||||||| Sbjct 1651 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq4710 Length=78879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTG-AATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 || || || | ||||| || ||||| || || ||||| || || ||||| || || Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || ||||| |||| ||||| |||||||| || || Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || || | |||||||| Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || |||| || || ||||| |||||||| Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495778112116000