Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq61 556 2e-153 seq2872 306 5e-78 >seq61 Length=55249 Score = 556 bits (616), Expect = 2e-153 Identities = 1279/1906 (67%), Gaps = 24/1906 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || |||| | ||||||| || |||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 78948 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || |||| |||||| | | ||||||||| | | | | ||| |||| || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 || ||||| ||||| || | || |||||||| || ||||| || || | || || Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-T 79183 |||||| |||| || || ||||| |||||||| ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 79184 TTCTAAGACCGTATGATCT--GATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 |||||| || ||| ||| |||||| |||||||| |||||||||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTGT 79300 || | ||| | ||| || || ||||| || || || | || | | || | || Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | |||||||| || || ||||||| || | |||||||| ||||| | || || || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 | ||||||||||| |||| || |||||| | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 79541 TCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA--- 79597 | ||| | ||| || ||||| ||||| ||||| ||| | ||| Sbjct 27173 TTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTGAAG 27114 Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | ||| Sbjct 27113 TCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCG 27054 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||||| | ||||||||||||||||| || || || ||||| || | ||| || |||| Sbjct 27053 AATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGAT 26994 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | ||||| |||| || | ||||| | || ||| ||||||| ||||| |||| |||| Sbjct 26993 TGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAG 26934 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GACTTGTATCTCTTTTCT 79836 |||| | ||| || | ||| | | | || || || | | || ||| | | | Sbjct 26933 ATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT-CG 26875 Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 || ||||| | |||||| | || || || || |||||||| || || || || ||| Sbjct 26874 CTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGA 26815 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 || | || |||||||| || |||||| || ||| ||| || || |||||||| ||| Sbjct 26814 CACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAACAGA 26755 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 || || ||||| | || || ||||| | | ||| ||||| || || || || ||| Sbjct 26754 TCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTC 26695 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 ||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| | | Sbjct 26694 TTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAA 26635 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || ||||| ||| || || ||||| | || | ||| |||||| | ||||| Sbjct 26634 GCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTG 26575 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| || | | |||||| || || ||||| || || |||| || | || ||||| Sbjct 26574 AGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCA 26515 Query 80197 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 ||||| | | | |||| || || || || || || ||| ||||| | ||| || Sbjct 26514 CGAATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCACACT 26457 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAG 80313 | | | | | | ||||| || ||| ||| || || |||||| || ||||| Sbjct 26456 GCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAA-AAGGAAACAC 26398 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||| ||| ||||| | || | ||| |||||| || || || || |||||||| Sbjct 26397 GATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTAAAA 26338 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | |||||||| ||||| | ||| || || || || ||| ||| Sbjct 26337 TAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATT 26278 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || | ||| || | ||| | ||||||||| || | ||| |||| ||| ||| || || Sbjct 26277 CCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCTTT 26218 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 | ||| || || || | || || || |||||||||||||| ||| || || || Sbjct 26217 AGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGATCA 26158 Query 80554 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 80599 || || || | ||||| || ||| | ||| ||||| |||| Sbjct 26157 TAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 26112 >seq2872 Length=9359 Score = 306 bits (338), Expect = 5e-78 Identities = 578/844 (68%), Gaps = 11/844 (1%) Strand=Plus/Plus Query 49658 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 49717 |||||||||| || ||||||||||| || ||||| || || ||||| || |||| Sbjct 2976 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 3035 Query 49718 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 49777 | || || | |||||||| || ||||| | || ||||| || | ||| | Sbjct 3036 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAA 3095 Query 49778 ATTCAGAAATCAAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| | |||| | ||| |||||||| || |||||| ||||| |||| | Sbjct 3096 GCTCA---ACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 3152 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || || | || || || || || | || || || || || ||||| | || | Sbjct 3153 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAG 3212 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 |||| ||||| || | | | ||| ||| || | |||| ||||||| |||| Sbjct 3213 CATCCGTTATGATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACA 3272 Query 49955 TCAAACAT-GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | || || || || || || |||||||| || || | | || | ||||||||| || Sbjct 3273 T-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAAT 3331 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || ||||| ||||| || |||||||| || ||||| || ||||| ||||| |||| Sbjct 3332 GTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTG 3391 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC 50132 |||||||| ||||| || || ||||| |||| || | || ||| | |||| || || Sbjct 3392 AAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTC 3451 Query 50133 --ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | ||||| ||||||| || |||||| || ||| ||||||||||| ||| Sbjct 3452 GAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATG 3511 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| |||||||||| | | || | ||| | | ||| || || || | | ||| Sbjct 3512 GCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTG 3571 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| ||||| | || || ||||| ||||| || || || || || | |||||| Sbjct 3572 TACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCG 3631 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || | |||||||||| | ||| ||||| | | |||||| || || ||||| ||| Sbjct 3632 GTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAA 3691 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || ||||| ||||| ||| ||||| || || || || || | Sbjct 3692 GCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCC 3751 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||||| | || || || || | ||| |||||||| || ||||| || ||||| || ||| Sbjct 3752 CAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCC 3811 Query 50491 TTTT 50494 | || Sbjct 3812 TGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717854852712200