Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 187 2e-42
>seq2872
Length=9359
Score = 187 bits (206), Expect = 2e-42
Identities = 572/876 (65%), Gaps = 14/876 (2%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|||||||| ||||||||| ||| ||||| || || || |||| |||||
Sbjct 2930 TAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGCGC 2989
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||||| ||| | || || |||||||| ||||| || |||| || || | |||
Sbjct 2990 TGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCC 3049
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACA-CTTTATCACAACCTAGTTCTAATAGTAA 13702
|| || |||||||| ||| | | | ||| ||| || || || | | ||
Sbjct 3050 ATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACT-CCAAGCTCAACCAATAG 3108
Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762
| |||||| | |||||| ||||||| ||||| | | |||| ||||| || || | ||
Sbjct 3109 GCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGTT 3168
Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822
|| || | || ||| | || || | || |||| |||||| || |||| ||
Sbjct 3169 GACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGAT--- 3225
Query 13823 TGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAA 13878
| ||| || || | ||| | | | ||||| || || || ||| ||||
Sbjct 3226 TTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCAA 3284
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
| |||||||| || || ||||| | | || | |||||| || ||||| | ||| ||||
Sbjct 3285 AGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCA 3344
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
| | ||| || || || | ||| || || | ||||| ||| ||||| || || |
Sbjct 3345 TAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTT 3404
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058
|||| |||||||| || || | ||||| ||||| || || || |||||
Sbjct 3405 CAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAAG 3464
Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118
|||||| || | || |||| | ||| |||||||| ||||| || | ||
Sbjct 3465 AAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGAT 3524
Query 14119 ATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176
| || || | || | | ||| || | || ||||| || | || |||||||| ||
Sbjct 3525 AGTCTCGCTGATGAGGATCCCTGATAT--AGGTGTCAATGAGCACACTGTACATTTCGGA 3582
Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236
|| | || ||||| || ||||| || ||||||||||| | || || | | || ||
Sbjct 3583 ATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCAC 3642
Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296
||| | ||| | |||| ||| |||||| ||||| || |||||| ||| ||||| ||
Sbjct 3643 TTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAA 3702
Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356
||||| | | || || | |||| | || | || || |||||| | |
Sbjct 3703 GGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGTCAT 3762
Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
||||| || ||||| ||||| || || ||||| ||
Sbjct 3763 GTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAA 3798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479451526757000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |