Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq61 453 2e-122 seq2872 288 1e-72 >seq61 Length=55249 Score = 453 bits (502), Expect = 2e-122 Identities = 1226/1867 (66%), Gaps = 22/1867 (1%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCC 70850 |||| | ||| || ||||| | | || || |||||| || || ||||| ||||| || Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTT-GTGCGCAGATAATACATTCC 27950 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||| || || || |||| | | ||||| || |||| ||| ||| | || Sbjct 27949 TGTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGG 27890 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||||| | |||||| || | || ||||| || || || || || || | || || || Sbjct 27889 TTCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGC 27830 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 ||| || ||| | | ||| | |||||||| | ||||| |||| || | || | | Sbjct 27829 CATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-T 27771 Query 71030 CTTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | |||| | || | | || || ||||| |||| | ||||| || ||| || | Sbjct 27770 CCTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCA 27711 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || |||| |||||| | | ||||||||| | | | | |||| |||| || || | Sbjct 27710 TGTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACAT 27651 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 || ||||| ||||| || | | |||||||| || |||||||| || | |||| Sbjct 27650 TGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACT 27591 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 ||||||| |||| || || ||||| ||||| || ||||| || || || | || | Sbjct 27590 CATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAGCAGCGAGT 27531 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATG 71326 |||||| ||||| | |||||| |||||||| ||||| |||||| | | Sbjct 27530 TTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGTGG 27471 Query 71327 GTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATAT 71385 || || || || || | || | | || || || Sbjct 27470 GTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGTAG 27412 Query 71386 GTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAA 71445 || || || || || || |||| || || |||||||| ||||| | || ||||| || Sbjct 27411 GTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAG 27352 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 71505 ||||||||||| |||| || |||||| | |||| || ||| | ||| || Sbjct 27351 ATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAACGC 27292 Query 71506 AAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTA 71565 | ||||| || ||||| || || || ||||||||||| || || || | ||||| | Sbjct 27291 ATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAA 27232 Query 71566 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625 || || | | || || || | ||||| ||||| ||||| || ||||| || | |||| Sbjct 27231 TTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTT 27172 Query 71626 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TT 71682 ||| | ||| || ||||| ||||| ||||| ||| | ||| | Sbjct 27171 CTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTC 27112 Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| |||||||| | ||||||| ||| || ||||| | ||||| | | | | Sbjct 27111 ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAA 27052 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| | |||||||||||| || || || || |||||||| || | ||| || ||||| Sbjct 27051 TATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTG 26992 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||||| |||| || | ||||| | || || ||||||| ||||| |||| |||||| Sbjct 26991 CTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGAT 26932 Query 71863 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT 71922 || | ||| || | ||| | | | || || || | | || | || || Sbjct 26931 TCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTC 26872 Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 ||||| | |||||| | || || || || |||||| | | || || || ||||| Sbjct 26871 TCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACAC 26812 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 | | ||||||| || ||||| || ||| | | || || |||||||| ||||| Sbjct 26811 TTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAACAGATCG 26752 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 || ||||| | || || ||||| | | ||| ||||| || || || || |||||| Sbjct 26751 GGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTT 26692 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 || || || | |||| | | ||||| |||||||| ||||||| ||| ||||| | | | Sbjct 26691 TTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCG 26632 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || || || ||| || || ||||| | || | ||| |||||| | ||||| | | Sbjct 26631 CCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGC 26572 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || || | | |||||| || | ||||| || || |||| || | || |||||||| Sbjct 26571 ATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGCACGA 26512 Query 72283 AT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 || | ||| |||| || || || || || || ||| ||||| | ||| || | | Sbjct 26511 ATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCT 26454 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAAAACAGC 72397 | | | | ||||| || || ||| | |||| |||||| || ||||| Sbjct 26453 CGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTTAA-AAGGAAACACG 26397 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| ||| ||||| | || | ||| |||||| || || || || |||||||| Sbjct 26396 ATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTAAAAT 26337 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | ||| || | |||||||| ||||| | ||| || || || || ||| |||| Sbjct 26336 AGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGGATTC 26277 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | | ||| || | ||| | ||| ||||| || | ||| |||| ||| ||| || || | Sbjct 26276 CAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATCTTTA 26217 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 ||| || || || | || || || |||||||||||||| ||| || || || | Sbjct 26216 GCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGATCAT 26157 Query 72638 AAATAAT 72644 | || || Sbjct 26156 AGATGAT 26150 >seq2872 Length=9359 Score = 288 bits (318), Expect = 1e-72 Identities = 607/896 (68%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 ||||||| || ||||||| | ||| |||||| || || |||||||||| Sbjct 2928 TTTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCGATGTAACTCCCATGC 2987 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 || ||||||||||| || ||||| || || || || || ||||| || || | | Sbjct 2988 GCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCT 3047 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||||||| || ||||| | || ||||| || | ||| | ||| | || Sbjct 3048 CCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCA---ACCA 3104 Query 41895 AT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 || | ||| |||| || || |||||| ||||| |||| ||||| || || | Sbjct 3105 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 3164 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || || || || || | || || || || || ||||||| || || || ||||| Sbjct 3165 AGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTAT-- 3222 Query 42012 TAGATCTTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 42067 ||| | | || | | ||| ||| || | | || ||||||| ||||| || || Sbjct 3223 --GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCAC 3279 Query 42068 -GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || || || || |||||||| ||||| | | || ||||||||||| || || ||||| Sbjct 3280 CGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCC 3339 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||| || |||||||| || ||||| || || || ||||| ||| |||||||| Sbjct 3340 AGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGAT 3399 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATGT-AT 42243 ||||| || || ||||| ||||||| | || ||| | |||| || | | || Sbjct 3400 GCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGAT 3459 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| ||||||| || |||||| || ||| ||||||||||| |||||||| || Sbjct 3460 CCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAA 3519 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||||||| | | || | ||| | | ||| || || || | | ||| |||||||| Sbjct 3520 GAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTC 3579 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| | || || ||||| ||||| || || || || || | |||||||| ||||| Sbjct 3580 GGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTG 3639 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 |||||| | ||| ||||| | | ||||||||| || ||||| ||| || ||||| Sbjct 3640 CACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAA 3699 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || ||||| ||||| ||| |||| || | || | || ||||||| | Sbjct 3700 GAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATCAGT 3759 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 || || || || | ||| |||||||| || ||||| || |||||||| |||| || Sbjct 3760 CATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670752414089800