Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq61 158 1e-33 SEQ10860 116 4e-21 >seq61 Length=55249 Score = 158 bits (174), Expect = 1e-33 Identities = 542/839 (65%), Gaps = 42/839 (5%) Strand=Plus/Minus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 ||||| || |||||||||| || ||| ||| || | ||||| || || | ||| Sbjct 27387 GCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTG 27328 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 | | ||||| || ||| | || || | |||| || || || || ||||| || Sbjct 27327 AGCAATACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAG 27268 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 156946 || |||| ||||||||| ||||||||||| | | ||| ||||| ||||| | Sbjct 27267 CCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGC 27208 Query 156947 GGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACT-ACATGTTTGACCACAGT 157005 || ||| ||||| |||||| ||||| |||||| | || | ||| ||| || Sbjct 27207 GGATAGTAATTGATATCAATGATTTTGTTCAAATT-TCTGGTGACAGTTTTAGTAACTTC 27149 Query 157006 GTGCAATAGTTGAAAATCAAAAGTATCATT---ATTGATATATTTATTGACGGCAATCGA 157062 | || | | ||||| || || | | | | | | | |||| | ||| ||||| Sbjct 27148 CTTCAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGA 27089 Query 157063 CGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAA 157122 || | ||| || |||||| | || ||||| || |||||| || ||||| | || | Sbjct 27088 TGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAG 27029 Query 157123 ATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTT 157182 ||||||||||| || || ||| |||||||| || | |||||||| |||||| Sbjct 27028 GTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTT 26969 Query 157183 GTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG-------------- 157228 | | | ||||||||| ||||| || || ||||| ||| | ||| Sbjct 26968 GAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGT 26909 Query 157229 TTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAATGT 157288 ||| || ||||| || ||||| ||||| || || |||||| | | Sbjct 26908 TTGTGCTTTAATCACAC------GATTTG--CGCGACCCTCGC------TCTCGTACTTT 26863 Query 157289 TTGTACCAGTATTCAAAGTCAT--CACCATACGTATCGTTGAGCTTAGGACACTCGTTAG 157346 | ||| | |||||||||| | ||| ||| || | | ||||||| || || Sbjct 26862 GTATACAGCTTCTCAAAGTCATCCCCCCAAACG--TCTTCCAAGCCGGGACACTTGTGAG 26805 Query 157347 GACACATTAATGACCATATAC-CGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACC 157405 |||||| | ||||| || | | || | || || || |||||||| | |||||| | | Sbjct 26804 GACACAACAGCGACCA-ATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATC 26746 Query 157406 CATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATG 157465 || || |||| | | |||||| ||| || ||||| |||| |||| | | Sbjct 26745 CACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGG 26686 Query 157466 TGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTT 157525 | || | || | || ||| ||||||| ||||| | ||| | || || ||| | Sbjct 26685 TCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGT 26626 Query 157526 CGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGG 157581 ||||| |||||||||||| || | ||| ||| ||||||||| |||| ||||| || Sbjct 26625 CGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGG 26567 >SEQ10860 Length=7223 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || || | |||||| |||||||| || ||||||||| | |||| | ||||| Sbjct 1472 ACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCC 1531 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || || ||| |||||| ||| || ||||| ||||| || ||||||||||| | Sbjct 1532 AATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 1591 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || |||| ||||| || |||| ||| | ||||| Sbjct 1592 ATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 1651 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| ||||| |||||||| Sbjct 1652 CCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506722201263600