Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 268 1e-66
seq3808 134 2e-26
seq61 132 7e-26
SEQ18263 125 1e-23
>seq2872
Length=9359
Score = 268 bits (296), Expect = 1e-66
Identities = 567/834 (68%), Gaps = 28/834 (3%)
Strand=Plus/Minus
Query 125035 AAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG 125094
|| ||||| | || || || ||||| |||||||| || ||||||||||||||| || |
Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756
Query 125095 ATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCT 125154
|||||| | | | || || | |||||| | || |||||||| | ||||||||||
Sbjct 3755 ATTGGGCCAAGCTT---ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCT 3699
Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGA 125214
|||| | || |||||||| || ||||| |||||| | ||| || ||||| ||
Sbjct 3698 TTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGC 3639
Query 125215 CCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274
| | |||| |||||||| || ||||| || || ||||| ||||| || |
Sbjct 3638 AGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCG 3579
Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCT 125334
|||||||| | || ||||||| || || | ||||| || | | || ||||
Sbjct 3578 AAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACTATCTCT 3519
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGGTGATTCGGT 125391
| || || || || ||| ||||| || | ||| ||||| | |||| || |
Sbjct 3518 TCAATGCCATTGAAACGATGCCGGCTGT---TAAGCGGAAGGCAGACTGGGCTCTTTCTT 3462
Query 125392 GGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448
||||| | || ||| || | || | || | | | || || || || || |
Sbjct 3461 GGATCTCT-TCG--AAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTG 3405
Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508
| ||||||||||| || || ||||| ||||||| ||||| |||||||| ||||| |
Sbjct 3404 AAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTA 3345
Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568
|||| ||||| || | ||||| || || ||||| || || || || || |||||||
Sbjct 3344 TGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACT 3285
Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628
|||| | || |||| |||| || || || | | | || | || |||
Sbjct 3284 TTGCGGTGCTTATGTT--CCAAC-ATTTG-GTGCAGCG-GC----CTAGTCGGGAACGCA 3234
Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688
|||| | || |||| ||||| |||| || || || ||||| || ||||| | || |
Sbjct 3233 TCATTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGC 3174
Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748
| |||| | |||||||||||||||| || |||| ||| || || |||||||| || |
Sbjct 3173 CCGTCAACTTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTG 3114
Query 125749 ATCGTCTACTGTACGAG--TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806
|||| ||| || ||| | || ||| |||||||||||||| | |||||||| ||
Sbjct 3113 ATCGCCTATTGGTTGAGCTTGGAGTGG--GCAAGATTTACAACACAAAGAATCCATTCTC 3056
Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860
|||||| | || || | || || || |||||||| ||||||||||| ||
Sbjct 3055 GTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGT 3002
>seq3808
Length=15542
Score = 134 bits (148), Expect = 2e-26
Identities = 370/565 (65%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| |||||||| || || ||||| || |||||| | || | || || ||||| |
Sbjct 5515 GGGGATCTGGGTCCGGTCTACGGCTTTCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 5574
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186
||||| ||||| || || || | ||||| ||||| | | ||||| || |
Sbjct 5575 TGCGATGATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATT 5634
Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246
| |||||| | ||| | | ||| | |||| | |||||||| ||| | | |
Sbjct 5635 CGAAACAATCCCTCGGATCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATACCC 5694
Query 70247 CAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA----CGATGG 70299
|||||||||| || || || ||||| |||| ||||| || ||| | ||| ||
Sbjct 5695 AAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGA-GG 5753
Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359
|| | || || |||| ||| | ||||| |||||||| ||||| || || |||||
Sbjct 5754 AGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGGCTCGGGGTTCCTTTTAA 5813
Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419
||| || ||| | || | || |||||||||| || | ||||| |||| |
Sbjct 5814 CATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCTGG 5873
Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479
|| || || |||||||| || || |||| |||||| | ||||| | || ||||| |
Sbjct 5874 TGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCATTGCA 5933
Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539
|||||| | ||| |||| | || ||||| ||||| | || || | ||
Sbjct 5934 ACAGCAACTAAAGCGGCAGCCTCGTCCATTTCCTAAGCTTAACATTAAGCGGCAGGTCAC 5993
Query 70540 AAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAA 70599
||||||||| ||| || ||||||||| ||| || ||| |||| | ||
Sbjct 5994 AAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTTGGATACAATCCTCATGAAAA 6053
Query 70600 GATTCCCATGGTTCTGGCTGTTTAG 70624
||||| |||| |||||||||||
Sbjct 6054 GATTCAAATGGAGATGGCTGTTTAG 6078
>seq61
Length=55249
Score = 132 bits (146), Expect = 7e-26
Identities = 322/481 (67%), Gaps = 10/481 (2%)
Strand=Plus/Plus
Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841
|||||||| |||| || || || ||||||||||| | ||| |||| | | || |||
Sbjct 27527 AGAAACTCGCTGCTTGTAGCTCCAATGCCCACGGCATCTACTGCCCAGATCATGGGTAAT 27586
Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901
||| || ||||| |||| || |||||||| ||| || ||| ||| ||||||
Sbjct 27587 AATGAGTCCTTTGAGCCGTATACTTCAAACATTTACACCAGGCGCGTTTTGTCCGGAGAG 27646
Query 97902 TTTCAAT-TGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGTGGAAC 97958
|| |||| || || || ||| | || || || ||| | || || | ||| |
Sbjct 27647 TT-CAATGTGGTAAATCATCATTTGTTGCGGGATTT--AACCGAACTAGATTTATGGGAT 27703
Query 97959 GATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATC 98018
||||||||| | ||||| || ||| ||||| |||||||| |||
Sbjct 27704 GATGACATGAAGAATCAAATCATTGCCAGTCGTGGCTCCATACAAAACATCGAATCCATT 27763
Query 98019 CCGGAAGAGTTGCGCAGAATCT--ACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGA 98076
|| | || | || | |||| |||| || |||||||| || || ||| | |
Sbjct 27764 CCTCAGGAAGTACG--GGATCTTTACAAAACCGTCTGGGAAATCTCGGTGAAGTCAACCA 27821
Query 98077 TCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACG 98136
|| | ||||| || || | |||| | ||||||||||||||||| ||||| | |||
Sbjct 27822 TCAAGATGGCAGCTGATCGCGGTGCTTTTATTGACCAGAGTCAATCATTCAACATTCACG 27881
Query 98137 TTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCC 98196
||||||| |||| |||| | | || || || || || | | | ||||| ||||
Sbjct 27882 TTGCCGAACCCAACTACGGCAAGTTAACATCCATTCATTTCTTCTCGTGGAAGGCAGGCC 27941
Query 98197 TCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGG 98256
||||||| || ||||| |||||| | |||||| | || ||||||| || | ||| || |
Sbjct 27942 TCAAGACAGGAATGTATTATCTGCGCACAAAGCCAGCTGCCAATGCTATTCAATTCACAG 28001
Query 98257 T 98257
|
Sbjct 28002 T 28002
>SEQ18263
Length=3285
Score = 125 bits (138), Expect = 1e-23
Identities = 231/336 (69%), Gaps = 6/336 (2%)
Strand=Plus/Minus
Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160
||||||| | |||||||| ||||| || ||||| | || || ||||| || || || ||
Sbjct 1657 TTTGCGGAAGAAGATGACACCGGCGCGTGGACCACGCAGCGTTTTGTGTGTGGTCGTTGT 1598
Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220
||||||||| ||||||||| || || || | | | || | || || || |
Sbjct 1597 CACAATGTCGGCATACTCAAACGGTGAGGGTATCTGCTCGGCAGCCACCAGACCGGCCAC 1538
Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCG--GCA-ATCTCTCGGAATCG 127277
|| || || ||||||||||| ||| ||| | |||| ||| |||| ||||||||
Sbjct 1537 ATGCGCCATGTCGGCCATCAGATAGGCGCCAAC---ATCGTTGCAGATCTGACGGAATCG 1481
Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337
||| |||| || | |||||| | ||||||| ||||| | | ||| |||
Sbjct 1480 CGCATAATCCAGCAAACGCGAATAGCACGAGATGCCGGCAATGATGATCTGAGGGCGGAA 1421
Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397
||||| |||||| | ||| | ||||| | || || ||| |||||||||||
Sbjct 1420 AGTCTTGGCTGCCTCGGCCAACTTGTCGTAGTCAATGATGCCGGTCACGGGATCCACCTT 1361
Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGA 127433
||| |||||||| ||||| || | ||||| || ||
Sbjct 1360 GTAGGGCATGCTCTCGAAGAATATCGATGTGGCCGA 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740632118319800
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