Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2872 268 1e-66 seq3808 134 2e-26 seq61 132 7e-26 SEQ18263 125 1e-23 >seq2872 Length=9359 Score = 268 bits (296), Expect = 1e-66 Identities = 567/834 (68%), Gaps = 28/834 (3%) Strand=Plus/Minus Query 125035 AAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG 125094 || ||||| | || || || ||||| |||||||| || ||||||||||||||| || | Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756 Query 125095 ATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCT 125154 |||||| | | | || || | |||||| | || |||||||| | |||||||||| Sbjct 3755 ATTGGGCCAAGCTT---ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCT 3699 Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGA 125214 |||| | || |||||||| || ||||| |||||| | ||| || ||||| || Sbjct 3698 TTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCCAAGAAGTGC 3639 Query 125215 CCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274 | | |||| |||||||| || ||||| || || ||||| ||||| || | Sbjct 3638 AGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCG 3579 Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCT 125334 |||||||| | || ||||||| || || | ||||| || | | || |||| Sbjct 3578 AAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACTATCTCT 3519 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGGTGATTCGGT 125391 | || || || || ||| ||||| || | ||| ||||| | |||| || | Sbjct 3518 TCAATGCCATTGAAACGATGCCGGCTGT---TAAGCGGAAGGCAGACTGGGCTCTTTCTT 3462 Query 125392 GGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 ||||| | || ||| || | || | || | | | || || || || || | Sbjct 3461 GGATCTCT-TCG--AAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCTGCTGTTG 3405 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 | ||||||||||| || || ||||| ||||||| ||||| |||||||| ||||| | Sbjct 3404 AAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTA 3345 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568 |||| ||||| || | ||||| || || ||||| || || || || || ||||||| Sbjct 3344 TGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACT 3285 Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 |||| | || |||| |||| || || || | | | || | || ||| Sbjct 3284 TTGCGGTGCTTATGTT--CCAAC-ATTTG-GTGCAGCG-GC----CTAGTCGGGAACGCA 3234 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 |||| | || |||| ||||| |||| || || || ||||| || ||||| | || | Sbjct 3233 TCATTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGC 3174 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | |||| | |||||||||||||||| || |||| ||| || || |||||||| || | Sbjct 3173 CCGTCAACTTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGAGTTTGTCGCTG 3114 Query 125749 ATCGTCTACTGTACGAG--TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 |||| ||| || ||| | || ||| |||||||||||||| | |||||||| || Sbjct 3113 ATCGCCTATTGGTTGAGCTTGGAGTGG--GCAAGATTTACAACACAAAGAATCCATTCTC 3056 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860 |||||| | || || | || || || |||||||| ||||||||||| || Sbjct 3055 GTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGT 3002 >seq3808 Length=15542 Score = 134 bits (148), Expect = 2e-26 Identities = 370/565 (65%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| || || ||||| || |||||| | || | || || ||||| | Sbjct 5515 GGGGATCTGGGTCCGGTCTACGGCTTTCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 5574 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 ||||| ||||| || || || | ||||| ||||| | | ||||| || | Sbjct 5575 TGCGATGATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATT 5634 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCAC 70246 | |||||| | ||| | | ||| | |||| | |||||||| ||| | | | Sbjct 5635 CGAAACAATCCCTCGGATCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATACCC 5694 Query 70247 CAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA----CGATGG 70299 |||||||||| || || || ||||| |||| ||||| || ||| | ||| || Sbjct 5695 AAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGA-GG 5753 Query 70300 CAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAA 70359 || | || || |||| ||| | ||||| |||||||| ||||| || || ||||| Sbjct 5754 AGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGGCTCGGGGTTCCTTTTAA 5813 Query 70360 CATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCA 70419 ||| || ||| | || | || |||||||||| || | ||||| |||| | Sbjct 5814 CATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCTGG 5873 Query 70420 CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 || || || |||||||| || || |||| |||||| | ||||| | || ||||| | Sbjct 5874 TGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCATTGCA 5933 Query 70480 GGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539 |||||| | ||| |||| | || ||||| ||||| | || || | || Sbjct 5934 ACAGCAACTAAAGCGGCAGCCTCGTCCATTTCCTAAGCTTAACATTAAGCGGCAGGTCAC 5993 Query 70540 AAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAA 70599 ||||||||| ||| || ||||||||| ||| || ||| |||| | || Sbjct 5994 AAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTTGGATACAATCCTCATGAAAA 6053 Query 70600 GATTCCCATGGTTCTGGCTGTTTAG 70624 ||||| |||| ||||||||||| Sbjct 6054 GATTCAAATGGAGATGGCTGTTTAG 6078 >seq61 Length=55249 Score = 132 bits (146), Expect = 7e-26 Identities = 322/481 (67%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841 |||||||| |||| || || || ||||||||||| | ||| |||| | | || ||| Sbjct 27527 AGAAACTCGCTGCTTGTAGCTCCAATGCCCACGGCATCTACTGCCCAGATCATGGGTAAT 27586 Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901 ||| || ||||| |||| || |||||||| ||| || ||| ||| |||||| Sbjct 27587 AATGAGTCCTTTGAGCCGTATACTTCAAACATTTACACCAGGCGCGTTTTGTCCGGAGAG 27646 Query 97902 TTTCAAT-TGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGTGGAAC 97958 || |||| || || || ||| | || || || ||| | || || | ||| | Sbjct 27647 TT-CAATGTGGTAAATCATCATTTGTTGCGGGATTT--AACCGAACTAGATTTATGGGAT 27703 Query 97959 GATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATC 98018 ||||||||| | ||||| || ||| ||||| |||||||| ||| Sbjct 27704 GATGACATGAAGAATCAAATCATTGCCAGTCGTGGCTCCATACAAAACATCGAATCCATT 27763 Query 98019 CCGGAAGAGTTGCGCAGAATCT--ACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGA 98076 || | || | || | |||| |||| || |||||||| || || ||| | | Sbjct 27764 CCTCAGGAAGTACG--GGATCTTTACAAAACCGTCTGGGAAATCTCGGTGAAGTCAACCA 27821 Query 98077 TCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACG 98136 || | ||||| || || | |||| | ||||||||||||||||| ||||| | ||| Sbjct 27822 TCAAGATGGCAGCTGATCGCGGTGCTTTTATTGACCAGAGTCAATCATTCAACATTCACG 27881 Query 98137 TTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCC 98196 ||||||| |||| |||| | | || || || || || | | | ||||| |||| Sbjct 27882 TTGCCGAACCCAACTACGGCAAGTTAACATCCATTCATTTCTTCTCGTGGAAGGCAGGCC 27941 Query 98197 TCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGG 98256 ||||||| || ||||| |||||| | |||||| | || ||||||| || | ||| || | Sbjct 27942 TCAAGACAGGAATGTATTATCTGCGCACAAAGCCAGCTGCCAATGCTATTCAATTCACAG 28001 Query 98257 T 98257 | Sbjct 28002 T 28002 >SEQ18263 Length=3285 Score = 125 bits (138), Expect = 1e-23 Identities = 231/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||||||| | |||||||| ||||| || ||||| | || || ||||| || || || || Sbjct 1657 TTTGCGGAAGAAGATGACACCGGCGCGTGGACCACGCAGCGTTTTGTGTGTGGTCGTTGT 1598 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 ||||||||| ||||||||| || || || | | | || | || || || | Sbjct 1597 CACAATGTCGGCATACTCAAACGGTGAGGGTATCTGCTCGGCAGCCACCAGACCGGCCAC 1538 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCG--GCA-ATCTCTCGGAATCG 127277 || || || ||||||||||| ||| ||| | |||| ||| |||| |||||||| Sbjct 1537 ATGCGCCATGTCGGCCATCAGATAGGCGCCAAC---ATCGTTGCAGATCTGACGGAATCG 1481 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 ||| |||| || | |||||| | ||||||| ||||| | | ||| ||| Sbjct 1480 CGCATAATCCAGCAAACGCGAATAGCACGAGATGCCGGCAATGATGATCTGAGGGCGGAA 1421 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 ||||| |||||| | ||| | ||||| | || || ||| ||||||||||| Sbjct 1420 AGTCTTGGCTGCCTCGGCCAACTTGTCGTAGTCAATGATGCCGGTCACGGGATCCACCTT 1361 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGA 127433 ||| |||||||| ||||| || | ||||| || || Sbjct 1360 GTAGGGCATGCTCTCGAAGAATATCGATGTGGCCGA 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740632118319800