Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_004683.1
Length=57050
Score E
Sequences producing significant alignments: (Bits) Value
SEQ30131 260 5e-65
seq6253 158 4e-34
>SEQ30131
Length=2206
Score = 260 bits (288), Expect = 5e-65
Identities = 305/412 (74%), Gaps = 0/412 (0%)
Strand=Plus/Plus
Query 50511 ATCAGGTCAACCAAACCCGAGTTCTGGCGCTCGGAGCGGATCGCGTCGGTTTCATGGGAC 50570
||||| || || || || ||||||||| | ||| || ||| ||| | || |||||
Sbjct 1693 ATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCTGTCGACTGGGAT 1752
Query 50571 GCGCGGCTGGTGCTAAAGGGCCTCGAGTCGTATGTCGACGACAACGGCGTGGGCAAGGAC 50630
||||| ||||| || ||||| || ||| |||||||| ||||| || |||||| |||
Sbjct 1753 GCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGTGTGGGCCGGGAT 1812
Query 50631 GACATCGCGTTGATCGTCGGCGACGTGTTCCCTCGCGACATGCTCGCGAACCCTCGCGAG 50690
||||| || |||||||| || |||||| ||||||| |||||| |||||||||
Sbjct 1813 GACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCATTTCGCGAGGCCTCGCGAG 1872
Query 50691 ACTTACGCGAGGGTGTCCGAAGCGATTTCCGAGCTCCACCAGGCCGGTCTGCTGTGGCGC 50750
||| |||||||||||||||||| |||||| |||| | |||||||| || ||| |
Sbjct 1873 ACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGTCTCCTATGGAGA 1932
Query 50751 TACGAGGTCGACGGCACCCGTCTGCTGTTCGTGTCGTGGTGGGAGGACGTTCAGCGCATC 50810
||||||| ||| || | || | | | | ||| ||||| | | || || |||
Sbjct 1933 TACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGCCTCCAACGAATC 1992
Query 50811 GACAAACCGGGCAAGGGGCGTTTTCCCAGGCCAGACGGCACGATGAACTATCGTGACTCC 50870
||||| || ||| || ||||| ||||||||||||||||| |||||||| || ||
Sbjct 1993 GACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAACTACAAGGAATCA 2052
Query 50871 GAAATTCGCGAGAGTGTCGCGAGCCGTCGCGAGACCGTCGCGCCTGGAACAG 50922
|||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 2053 ACGATTCGCGAGAGTGTCGCGAGGGTTCCCGAAACCGTCGCGCCTGGAACAG 2104
>seq6253
Length=4700
Score = 158 bits (174), Expect = 4e-34
Identities = 367/548 (67%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 45781 CTGACTCTCACCGATCTGTTCTGTGGCGCTGGCGGTTCGAGTACGGGTGCGATCGAGATC 45840
|| || ||| |||| | ||||| || || ||||| || || || || |||| ||
Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414
Query 45841 CCCGGCGTGGAGGTGCGCGTCGCGTCGAACCACTGGGACCTGGCCGTCGAGACGCACAAC 45900
|||||||| || || |||| ||| | | ||||||||| || |||||||| || ||| |
Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354
Query 45901 ACGAATCACCCCGACGCCGACCATGTGTGCGCCGATCTGTCGCAGATTGACCCGCGCCGG 45960
| ||||| |||||||| || | |||||||| | ||| || ||| || |
Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294
Query 45961 TTCCCGCGCACCGACATTCTCTGGGCGAGCCCGGAGTGCACGAATCACTCGGTGGCCAAG 46020
||||| | ||| ||| | |||| ||| ||||| | ||| ||||||| ||
Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234
Query 46021 GGCCGCAAACGCGTCGACTCG-CAGCCCGATCTGT--TCGGCGAGGTGC---TGCCCGAC 46074
||| || | |||| | | ||| | || |||| || | | ||||||
Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCGAC 4174
Query 46075 GCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGACGTGCCCCGGTTCGCCGAGGCGCAC 46134
| ||| ||| || ||||||||||| |||||||||||| || ||| ||||| |||
Sbjct 4173 GACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCAC 4114
Query 46135 CGCTACCAGGCCGTCATCGTCGAGAACGTCGTGGACGCGTGGCACTGGCAGCCGTTCCAG 46194
| |||| || ||||| |||||||||||| || | | ||| ||| ||||
Sbjct 4113 CACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCC 4054
Query 46195 GCGTGGCTGATGGCCATGGACTCGCTGGACTACGAGCACCACATCGTGTTCCTGAACTCG 46254
|||||| | ||||| ||||| |||| | |||| |||||| ||| || | || |||
Sbjct 4053 GCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGC 3994
Query 46255 ATGCACGCGCAGGC-GTTCGGTCCGGGGGCGCCGCAGTCACGGGACCGCATGTACGTGGT 46313
|||||||| | | | || ||| || | || |||| || || ||||| | ||| ||
Sbjct 3993 ATGCACGC-CGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGT 3935
Query 46314 GTTCTGGC 46321
||||||||
Sbjct 3934 GTTCTGGC 3927
Score = 89.7 bits (98), Expect = 2e-13
Identities = 134/188 (71%), Gaps = 8/188 (4%)
Strand=Plus/Minus
Query 46828 CCATTCATCGCGGAGTTGCGCGGCGGCGGGTCCAAGCACCGCCCGGT-TGATCA---TCC 46883
|| ||||||||||| | ||||||||||| || | | |||||| || || |||
Sbjct 3613 CCGTTCATCGCGGAACTCCGCGGCGGCGGC----AGTAGCACCCGGTCTGCCCACGATCC 3558
Query 46884 GCTGGCCACGGTCACCGCGTCGGGCACACACCACGGCCTGGTGACGACCTACTACGGCAA 46943
||| |||| ||||| || || || || ||||| |||||||| | | | |||||||||||
Sbjct 3557 CCTGTCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAA 3498
Query 46944 CGGGGGAGTGGTGCCCACCCGCGAGGCGCTGCCGACGTGCACGACGGTGGAGCGGCACGC 47003
||| | | | |||| || | || ||||||| ||| || |||||| ||| ||
Sbjct 3497 CGGCACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGC 3438
Query 47004 GCTGCTGA 47011
||| ||||
Sbjct 3437 GCTCCTGA 3430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 182338515546120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |