Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004683.1 Length=57050 Score E Sequences producing significant alignments: (Bits) Value SEQ30131 260 5e-65 seq6253 158 4e-34 >SEQ30131 Length=2206 Score = 260 bits (288), Expect = 5e-65 Identities = 305/412 (74%), Gaps = 0/412 (0%) Strand=Plus/Plus Query 50511 ATCAGGTCAACCAAACCCGAGTTCTGGCGCTCGGAGCGGATCGCGTCGGTTTCATGGGAC 50570 ||||| || || || || ||||||||| | ||| || ||| ||| | || ||||| Sbjct 1693 ATCAGATCGACGAAGCCGGAGTTCTGGAGTTCGAAGACGATAGCGGCTGTCGACTGGGAT 1752 Query 50571 GCGCGGCTGGTGCTAAAGGGCCTCGAGTCGTATGTCGACGACAACGGCGTGGGCAAGGAC 50630 ||||| ||||| || ||||| || ||| |||||||| ||||| || |||||| ||| Sbjct 1753 GCGCGTCTGGTCCTCAAGGGACTTGAGAGCTATGTCGATGACAATGGTGTGGGCCGGGAT 1812 Query 50631 GACATCGCGTTGATCGTCGGCGACGTGTTCCCTCGCGACATGCTCGCGAACCCTCGCGAG 50690 ||||| || |||||||| || |||||| ||||||| |||||| ||||||||| Sbjct 1813 GACATTGCTCTGATCGTCTCGGAAGTGTTCGTTCGCGACCATTTCGCGAGGCCTCGCGAG 1872 Query 50691 ACTTACGCGAGGGTGTCCGAAGCGATTTCCGAGCTCCACCAGGCCGGTCTGCTGTGGCGC 50750 ||| |||||||||||||||||| |||||| |||| | |||||||| || ||| | Sbjct 1873 ACTGTCGCGAGGGTGTCCGAAGCCATTTCCCAGCTGACTGAAGCCGGTCTCCTATGGAGA 1932 Query 50751 TACGAGGTCGACGGCACCCGTCTGCTGTTCGTGTCGTGGTGGGAGGACGTTCAGCGCATC 50810 ||||||| ||| || | || | | | | ||| ||||| | | || || ||| Sbjct 1933 TACGAGGCCGATGGTAATGAATTGATATACATTTCGAACTGGGACAGCCTCCAACGAATC 1992 Query 50811 GACAAACCGGGCAAGGGGCGTTTTCCCAGGCCAGACGGCACGATGAACTATCGTGACTCC 50870 ||||| || ||| || ||||| ||||||||||||||||| |||||||| || || Sbjct 1993 GACAAGCCAAACAAAGGACGTTTCCCCAGGCCAGACGGCACAATGAACTACAAGGAATCA 2052 Query 50871 GAAATTCGCGAGAGTGTCGCGAGCCGTCGCGAGACCGTCGCGCCTGGAACAG 50922 |||||||||||||||||||| || ||| ||||||||||||||||||| Sbjct 2053 ACGATTCGCGAGAGTGTCGCGAGGGTTCCCGAAACCGTCGCGCCTGGAACAG 2104 >seq6253 Length=4700 Score = 158 bits (174), Expect = 4e-34 Identities = 367/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 45781 CTGACTCTCACCGATCTGTTCTGTGGCGCTGGCGGTTCGAGTACGGGTGCGATCGAGATC 45840 || || ||| |||| | ||||| || || ||||| || || || || |||| || Sbjct 4473 CTCACCCTCTCCGACTTCTTCTGCGGTGCCGGCGGATCCTCCACCGGAGCACTCGACGTC 4414 Query 45841 CCCGGCGTGGAGGTGCGCGTCGCGTCGAACCACTGGGACCTGGCCGTCGAGACGCACAAC 45900 |||||||| || || |||| ||| | | ||||||||| || |||||||| || ||| | Sbjct 4413 CCCGGCGTCGACGTCCGCGCCGCCGCCACCCACTGGGATCTCGCCGTCGAAACCCACCAG 4354 Query 45901 ACGAATCACCCCGACGCCGACCATGTGTGCGCCGATCTGTCGCAGATTGACCCGCGCCGG 45960 | ||||| |||||||| || | |||||||| | ||| || ||| || | Sbjct 4353 CGCCACCACCCGGACGCCGAACACATCTGCGCCGACATCAGCCAGTACGAGCCGAGCTTG 4294 Query 45961 TTCCCGCGCACCGACATTCTCTGGGCGAGCCCGGAGTGCACGAATCACTCGGTGGCCAAG 46020 ||||| | ||| ||| | |||| ||| ||||| | ||| ||||||| || Sbjct 4293 TTCCCCCACACGGACCTCGCCTGGTTCTCCCCCTCCTGCACCAGCCACACGGTGGCGCAG 4234 Query 46021 GGCCGCAAACGCGTCGACTCG-CAGCCCGATCTGT--TCGGCGAGGTGC---TGCCCGAC 46074 ||| || | |||| | | ||| | || |||| || | | |||||| Sbjct 4233 GGCATGGCCCGTGCCGACCGGGCCGCCGCCTACGTCCTCGGAGAAACCCCCCTCCCCGAC 4174 Query 46075 GCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGACGTGCCCCGGTTCGCCGAGGCGCAC 46134 | ||| ||| || ||||||||||| |||||||||||| || ||| ||||| ||| Sbjct 4173 GACGCGCACGAACGATCCCGCGCCACCATGTGGGACGTGGTGCGCTTCACCGAGTACCAC 4114 Query 46135 CGCTACCAGGCCGTCATCGTCGAGAACGTCGTGGACGCGTGGCACTGGCAGCCGTTCCAG 46194 | |||| || ||||| |||||||||||| || | | ||| ||| |||| Sbjct 4113 CACTACGCCGCGGTCATTGTCGAGAACGTCACCGAGGTCACCAAGTGGGCGCCATTCCCC 4054 Query 46195 GCGTGGCTGATGGCCATGGACTCGCTGGACTACGAGCACCACATCGTGTTCCTGAACTCG 46254 |||||| | ||||| ||||| |||| | |||| |||||| ||| || | || ||| Sbjct 4053 GCGTGGATCATGGCGATGGAAGCGCTCGGCTACAAGCACCGCATTGTCATGCTCAACAGC 3994 Query 46255 ATGCACGCGCAGGC-GTTCGGTCCGGGGGCGCCGCAGTCACGGGACCGCATGTACGTGGT 46313 |||||||| | | | || ||| || | || |||| || || ||||| | ||| || Sbjct 3993 ATGCACGC-CGGCCTGTACGGCCCCGCCGCCGCGCAATCCCGCGACCGGTTCTACTGCGT 3935 Query 46314 GTTCTGGC 46321 |||||||| Sbjct 3934 GTTCTGGC 3927 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/188 (71%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 46828 CCATTCATCGCGGAGTTGCGCGGCGGCGGGTCCAAGCACCGCCCGGT-TGATCA---TCC 46883 || ||||||||||| | ||||||||||| || | | |||||| || || ||| Sbjct 3613 CCGTTCATCGCGGAACTCCGCGGCGGCGGC----AGTAGCACCCGGTCTGCCCACGATCC 3558 Query 46884 GCTGGCCACGGTCACCGCGTCGGGCACACACCACGGCCTGGTGACGACCTACTACGGCAA 46943 ||| |||| ||||| || || || || ||||| |||||||| | | | ||||||||||| Sbjct 3557 CCTGTCCACCGTCACAGCATCCGGAACCCACCATGGCCTGGTCATGTCGTACTACGGCAA 3498 Query 46944 CGGGGGAGTGGTGCCCACCCGCGAGGCGCTGCCGACGTGCACGACGGTGGAGCGGCACGC 47003 ||| | | | |||| || | || ||||||| ||| || |||||| ||| || Sbjct 3497 CGGCACAACGCAGACCACTGGCCGGCCGATGCCGACCGTCACCACCGTGGAGAAGCAGGC 3438 Query 47004 GCTGCTGA 47011 ||| |||| Sbjct 3437 GCTCCTGA 3430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182338515546120