Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 147 2e-30 SEQ32872 131 2e-25 SEQ26880 123 2e-23 >SEQ29447 Length=7397 Score = 147 bits (162), Expect = 2e-30 Identities = 115/137 (84%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 78292 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGC 78351 |||||||||| ||||||||| |||||||||||||||| |||||||||||| || || ||| Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 78352 GACCATGACTCGGTCGGCCTGTTCCAGCAGCGTCCGTCC---TGGGGCACGGTGGCCCAG 78408 |||||||| || |||| |||||||||||||||| | || |||||||| || || ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 78409 CGGATGAACCCGCGCGA 78425 || ||| | |||| ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ32872 Length=2637 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 116615 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 116674 ||||||||||||||||||||||| ||| | |||||| |||||| || |||||| Sbjct 191 CGGCCCGGGCCGTGGCTCCGCCGCCGGCGCCCTGGTCGCCTACGCACTGACGATCACCAA 250 Query 116675 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGA 116734 |||||||| ||| || ||| |||||||||||||| || |||||||||| |||||| Sbjct 251 CATCGACCCCATCGAGCACGGGCTGATGTTCGAGCGATTCCTCAACCCGGAACGCCCCTC 310 Query 116735 CTTCCCCGACATCGACGTCGACTTC 116759 | |||||| |||||| |||||||| Sbjct 311 CGCCCCCGATATCGACATCGACTTC 335 >SEQ26880 Length=5820 Score = 123 bits (136), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 144129 ATCAGCGAGAAGGGCATTGTCATCGCGCTCGCCGTCGCCCTGGTCGAGACCAACCTCAAG 144188 |||||||| |||||||| ||||| |||||| ||| ||||| ||| | | | ||| Sbjct 1571 ATCAGCGACCAGGGCATTAAAATCGCCCTCGCCACCGCACTGGTGGAGTCAGGCATGAAG 1512 Query 144189 ATGTACGCCAATCGGTCGGACCCGGAGAGCCTCAATTTCCCGCACGACGCGGTCGGCAGC 144248 ||||||||||| | | ||| || ||| | | || ||||| ||||| ||||||||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 144249 GACGCCAACAGCGTCGGCGTCTTCCAGCAGCGCG---CTCCCTGGTGGGGCACGGTCGCC 144305 ||||| || |||||| | ||||||||||||| | | ||||||||| ||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAA 1392 Query 144306 GATCGCATGGACGTCGCGCGCAGCGCGGCGATGTTCTACAAC 144347 || ||||||||| | ||| ||| | ||||||||| || Sbjct 1391 GACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGAC 1350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 78292 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGC 78351 |||||||||||| |||||||| ||||| |||||||||| ||||| || | ||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 78352 GACCATGACTCGGTCGGCCTGTTCCAGCAGCG 78383 ||| |||||||||||||| ||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499110590459600