Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value SEQ36884 201 8e-47 >SEQ36884 Length=2041 Score = 201 bits (222), Expect = 8e-47 Identities = 259/357 (73%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 99208 ACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGC 99267 ||| | |||| || |||| | |||| |||||| |||||||| | || | | || | Sbjct 358 ACCACCGCCTGGACCTCCTCGTCGGTGACGAAGGCGCCCTGGAGGCGCTTCGGCTTGTTC 417 Query 99268 GCCCCCACTGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCG 99327 |||||| || | || | ||||| ||||| || ||||| | |||||| ||||||| | Sbjct 418 GCCCCCTGCGGGATGAACAGGCCGTCGCCCATACCGATGAGCTTCTCGGCGCCGCCCTGG 477 Query 99328 TCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACG 99387 || ||||| || ||| || || || || | || ||||||| |||||| || |||||| Sbjct 478 TCGAGGATGACGCGGGAGTCCGTCAGCGAGGACGTCGCGAACGCCAGCCGGGACGGCACG 537 Query 99388 TTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 99447 ||| ||||||| || || || || || |||||||| || |||||||||||||| || || Sbjct 538 TTGGTCTTGATCAGACCGGTGACGACGTCCACGGACGGACGCTGCGTCGCCAGCACCAGG 597 Query 99448 TGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTC 99507 || || || || || || |||||||| | ||| ||||| ||| | |||| | ||| | Sbjct 598 TGGATACCCGCGGCGCGGGCCTTCTGGGTGATCCGGACGATGGCGTCCTCGATCTC---C 654 Query 99508 TTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 || | | ||||||||| || ||||| || || || || ||||||||| ||| Sbjct 655 TTCGGGGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGACGCACACGATGTACGGG 711 Score = 145 bits (160), Expect = 5e-30 Identities = 400/608 (66%), Gaps = 25/608 (4%) Strand=Plus/Plus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCA 99641 ||||||||||| || || ||| | | ||| || | |||||||| || ||||| Sbjct 789 GTGGCGCACGCGGGCGGACTTCATGTCCATGTACCGCTGCTCCATCTCCTCGACCAGCCA 848 Query 99642 CCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGAT 99701 ||||| || |||||| | | || || | | ||| || ||||| ||||| Sbjct 849 GGTCAGCGCCGTCGCCGCCTTCTTCGGCTGCGTGATGATCGGCGTGATGAGGTGCGGGAT 908 Query 99702 ACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGAT 99760 || | ||| ||||| ||||| || ||| || ||||||| | |||||| |||| | Sbjct 909 CCCCTCGTAGGGGGTCAGCTCCAC-CATCTTCGGGTCGACGAGGATGAGGCGGACCTCCT 967 Query 99761 CAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 99820 | |||||||||||| ||| | || || |||| ||||||| |||| ||||| || | Sbjct 968 CCGGGGTCGCCCGGGTGAGGATGGACACGAGCAACGAGTTGACGAAGGCCGACTTACCGG 1027 Query 99821 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTC---AGGGAGATGT 99877 | ||||| | ||| || |||||||| ||||||||||| | || || | | || | Sbjct 1028 AGCCGGTGGAGCCGGCGACCAGCAGGTGCGGCATCTT---CTGGATCGAGTGCGCGACGA 1084 Query 99878 CCTTGCCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGTCGTCTTCG------- 99930 | |||||||| ||||||||||| | | | || ||| | || ||| || Sbjct 1085 AATCGCCCTCGATGTCCTTGCCCAGACCGATGAGCATCGGGTCGTGGTCGGCGACCACCG 1144 Query 99931 --GGAACG------ATGT-GCTGCAACCGCACAGTCTGCCGTTCCGGCCGGGGGAGCTCG 99981 ||| || | || |||| | |||||| ||| ||| |||| || | |||| Sbjct 1145 CCGGAGCGTGCAGCACGTCGCTG-AGCCGCACCATCTCCCGGTCCGTGTTCGGCACCTCG 1203 Query 99982 ATTCCTACGGCTGTTTTCCCGGGGATGGGGGCAACCACCCGGACGCTCTCTGTTGCGAGC 100041 || || || || | ||||| ||||| |||| | || ||||| | || || || | Sbjct 1204 ATGCCGACCGCGGACTTCCCCGGGATCGGGGTGAGCAGACGGACATTGTCCGTCGCCGCC 1263 Query 100042 GCGTAGGCCAACTGGGACTGTAGTTGTGCGACTTTCTGGATGCGCACACCCGGCCCCAGT 100101 || ||||||| | ||||| || | | || || || ||||||||| || || Sbjct 1264 GCATAGGCCAGGTTCGACTGCAGGTTGGTGATCTTGGAGACCTTCACACCCGGGCCGAGC 1323 Query 100102 GTGATCTCGTAGCGTGTGACGCTCGGTCCATCGGTGCGGCCGGTGACCTTGGCCTCGATG 100161 || |||||||| ||||| |||| || || | |||||||||| ||| || | Sbjct 1324 TCGACTTCGTAGCGGGTGACCGTCGGCCCCCGGGAGAAACCGGTGACCTGGGCGTCCACC 1383 Query 100162 TCGAACTC 100169 | |||||| Sbjct 1384 TTGAACTC 1391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354443924323530