Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 163 7e-35 SEQ17778 140 7e-28 seq2872 114 3e-20 >SEQ10860 Length=7223 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || |||||||| ||||| || ||||| || || || ||||| | || ||||| | ||| Sbjct 1478 TGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGC 1537 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | | ||||||||| ||||| ||||||||||| ||||||||||| Sbjct 1538 TTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 1597 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || |||||||| || Sbjct 1598 GCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTG 1657 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| Sbjct 1658 AGGGTTTTAACGAAGATTTGCAT 1680 >SEQ17778 Length=11298 Score = 140 bits (154), Expect = 7e-28 Identities = 192/266 (72%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 238626 GGCAAAATGCATAG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAG 238684 |||||||||||| | ||||| | ||||||||||||| || ||||||||||||||||| Sbjct 4000 GGCAAAATGCATGGATTTCTGA-GAATGTATTGGGCCAAGAAGATACTTGAATGGACAGA 4058 Query 238685 ATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGG 238744 | | ||| || | || || ||||| || | |||||||| |||||| || || || Sbjct 4059 AACACCAGAGCAGGCGCTGGAGTATAGCATATTGCTGAACGACAAATACAGTCTGGATGG 4118 Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804 ||||| ||||| || || || || |||||||| | | || | || |||| || Sbjct 4119 CCGCGATCCCAACGGTTATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATAACGC 4178 Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAA 238864 |||| ||| | ||||||| || || || | || ||||| ||| | ||| ||| Sbjct 4179 ATGGAAGGAGCGTGCTATATTCGGCAAGATTCGCTATATGAACTATCAGGGATGTAAACG 4238 Query 238865 AAAATTTGATGTAAATGCTTTTATCA 238890 |||||||||||| ||||| ||| ||| Sbjct 4239 AAAATTTGATGTTAATGCATTTGTCA 4264 >seq2872 Length=9359 Score = 114 bits (126), Expect = 3e-20 Identities = 363/551 (66%), Gaps = 35/551 (6%) Strand=Plus/Minus Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808 ||||||| | || || || ||||| || |||||||| |||||||| | ||| | | | Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756 Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAG---ATTT-ATATCTTATATTCTTGCGTTT 268864 ||||| || | | | | || || |||| ||||| || | | || || Sbjct 3755 ATTGGGCCAAGCTTAC----GGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTC 3700 Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGT 268923 ||||| | | |||||| || |||||||||||||| || || | ||| | | ||||| || Sbjct 3699 TTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGA-ACGTTTTAGCCAAGAAGT 3641 Query 268924 ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTC 268983 ||| | | || || | || ||||| || |||||||| || || || ||| | ||||| Sbjct 3640 GCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTC 3581 Query 268984 AGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAA 269039 || ||||||||| | | || || || ||||| ||| | || ||| Sbjct 3580 CGAAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGA-------- 3529 Query 269040 GACTATTTTCTTCTATGAGA-----ACTATG--GACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||||| | |||| ||| | || ||| | |||| | || || | || ||| Sbjct 3528 GACTATCT-CTTCAATGCCATTGAAACGATGCCGGCTGT-TAAGCGGAAGG-CAGACTGG 3472 Query 269093 GCTCTGAAATGGATAAA--CGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 ||||| ||||| ||| || || | || ||| | | |||||||||| Sbjct 3471 GCTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCT 3412 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| ||||| || ||||| ||| ||||| | ||||| ||| ||||||| | Sbjct 3411 GCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGT 3352 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || |||||||| ||| | || ||||| ||||||||||| | || |||||| | || Sbjct 3351 GGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCAT 3292 Query 269270 TGCGACTTCGC 269280 || ||||| || Sbjct 3291 TGTGACTTTGC 3281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150718245577340