Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10860 163 7e-35
SEQ17778 140 7e-28
seq2872 114 3e-20
>SEQ10860
Length=7223
Score = 163 bits (180), Expect = 7e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| |||||||| ||||| || ||||| || || || ||||| | || ||||| | |||
Sbjct 1478 TGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGC 1537
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| || | | ||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1538 TTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 1597
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | |||||| ||||| ||||| || || || |||||||| ||
Sbjct 1598 GCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTG 1657
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || |||||
Sbjct 1658 AGGGTTTTAACGAAGATTTGCAT 1680
>SEQ17778
Length=11298
Score = 140 bits (154), Expect = 7e-28
Identities = 192/266 (72%), Gaps = 2/266 (1%)
Strand=Plus/Plus
Query 238626 GGCAAAATGCATAG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAG 238684
|||||||||||| | ||||| | ||||||||||||| || |||||||||||||||||
Sbjct 4000 GGCAAAATGCATGGATTTCTGA-GAATGTATTGGGCCAAGAAGATACTTGAATGGACAGA 4058
Query 238685 ATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGG 238744
| | ||| || | || || ||||| || | |||||||| |||||| || || ||
Sbjct 4059 AACACCAGAGCAGGCGCTGGAGTATAGCATATTGCTGAACGACAAATACAGTCTGGATGG 4118
Query 238745 TACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGC 238804
||||| ||||| || || || || |||||||| | | || | || |||| ||
Sbjct 4119 CCGCGATCCCAACGGTTATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATAACGC 4178
Query 238805 ATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAA 238864
|||| ||| | ||||||| || || || | || ||||| ||| | ||| |||
Sbjct 4179 ATGGAAGGAGCGTGCTATATTCGGCAAGATTCGCTATATGAACTATCAGGGATGTAAACG 4238
Query 238865 AAAATTTGATGTAAATGCTTTTATCA 238890
|||||||||||| ||||| ||| |||
Sbjct 4239 AAAATTTGATGTTAATGCATTTGTCA 4264
>seq2872
Length=9359
Score = 114 bits (126), Expect = 3e-20
Identities = 363/551 (66%), Gaps = 35/551 (6%)
Strand=Plus/Minus
Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG 268808
||||||| | || || || ||||| || |||||||| |||||||| | ||| | | |
Sbjct 3815 AACAGGCTGAAGCATCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTG 3756
Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAG---ATTT-ATATCTTATATTCTTGCGTTT 268864
||||| || | | | | || || |||| ||||| || | | || ||
Sbjct 3755 ATTGGGCCAAGCTTAC----GGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTC 3700
Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT-GTCAAGAGGT 268923
||||| | | |||||| || |||||||||||||| || || | ||| | | ||||| ||
Sbjct 3699 TTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGA-ACGTTTTAGCCAAGAAGT 3641
Query 268924 ACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTC 268983
||| | | || || | || ||||| || |||||||| || || || ||| | |||||
Sbjct 3640 GCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTC 3581
Query 268984 AGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT----AACAACGAAAAGAAAA 269039
|| ||||||||| | | || || || ||||| ||| | || |||
Sbjct 3580 CGAAATGTACAGTGTGCTCATTGACACCTATATCAGGGATCCTCATCAGCGA-------- 3529
Query 269040 GACTATTTTCTTCTATGAGA-----ACTATG--GACTGTGTGAGaaaaaaaTCTGAATGG 269092
|||||| | |||| ||| | || ||| | |||| | || || | || |||
Sbjct 3528 GACTATCT-CTTCAATGCCATTGAAACGATGCCGGCTGT-TAAGCGGAAGG-CAGACTGG 3472
Query 269093 GCTCTGAAATGGATAAA--CGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149
||||| ||||| ||| || || | || ||| | | ||||||||||
Sbjct 3471 GCTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGAACGTATTATTGCTTTTGCT 3412
Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209
||||| ||||| || ||||| ||| ||||| | ||||| ||| ||||||| |
Sbjct 3411 GCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGT 3352
Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269
|| |||||||| ||| | || ||||| ||||||||||| | || |||||| | ||
Sbjct 3351 GGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCAT 3292
Query 269270 TGCGACTTCGC 269280
|| ||||| ||
Sbjct 3291 TGTGACTTTGC 3281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150718245577340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |