Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_005345.2 Length=49220 Score E Sequences producing significant alignments: (Bits) Value SEQ34602 91.5 5e-14 SEQ18518 80.6 8e-11 >SEQ34602 Length=2152 Score = 91.5 bits (100), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 7516 CTGGAGTGGCTCGCCGACCCGGGGATCGAGATCCCCGAGGGTGCGACGGCCGTGCACGGC 7575 ||||| |||||||| ||| || | ||||||||||| || |||||| || |||||| Sbjct 1611 CTGGAACTGCTCGCCGCCCCCGGCGTGGAGATCCCCGAAGGCGCGACGAAGGTCCACGGC 1552 Query 7576 ATCACGACCGAGCACGCCCGCGAGCACGGCGAGCGCGCGCACGACG 7621 ||||| |||||| ||||||| ||||||||| || ||||||||| Sbjct 1551 ATCACCACCGAGTACGCCCGGGAGCACGGC---CGGCCGCACGACG 1509 >SEQ18518 Length=6842 Score = 80.6 bits (88), Expect = 8e-11 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 9509 GAGTGGCAGTCGCGGGCCCTGTGCGCGCAGACCGACCCGGAGCTGTTCCACCCGGAGATC 9568 || |||||| || ||| |||||||| |||||||| |||||| |||| |||||||| Sbjct 325 GACTGGCAGGAGCAGGCGCTGTGCGCCCAGACCGATCCGGAGGCGTTCTTCCCGGAGAA- 383 Query 9569 GGGCGGA-CGTGCCGCAACGCGCGGAAGGTATGCGGGGCGTGCGAGGTGCAGAGCGAGTG 9627 ||||||| || ||| | ||| | | | ||| | || |||| ||| | |||||| Sbjct 384 GGGCGGATCGACCCGGGAGGCGAAGCGGATCTGCCGCGCATGCGGGGTCCGCGACGAGTG 443 Query 9628 CCTCGCGCATGCGCTCGCCGTGCCCGA-GACCG--ACGGCGTGTGGGGCGGGCTGACGTA 9684 ||||| | | || || || || ||| || || ||| | |||||||| ||| | | Sbjct 444 CCTCGAGTACGCACT---CGAGCACGATGAGCGGTTCGGGATCTGGGGCGGACTGTCCGA 500 Query 9685 CCGCGAGCGCCGCCGGCT 9702 |||||||| ||||| || Sbjct 501 GCGCGAGCGTCGCCGTCT 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157296233627820