Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7225 143 4e-30 seq7224 143 4e-30 seq3746 129 9e-26 >seq7225 Length=542 Score = 143 bits (158), Expect = 4e-30 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| || ||||| ||||||||||| Sbjct 347 CGCAAAGCGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTAT 406 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || ||||| ||||||| | | ||||| || | Sbjct 407 CCGTCGTCTAGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGTCTTATTTATGAGGAAAC 466 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | ||| | | | |||||||| |||||| || || ||||| Sbjct 467 TCGTGGTGTGCTGAAGGTTTTCTTGGAAAACGTTATCCGTGATGCAGTCACATACACCGA 526 Query 16612 GCACGCTAA 16620 ||||| || Sbjct 527 ACACGCCAA 535 >seq7224 Length=531 Score = 143 bits (158), Expect = 4e-30 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || ||||||||||| || ||||| ||||||||||| Sbjct 336 CGCCAAGCGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTAT 395 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || ||||| ||||||| | | ||||| || | Sbjct 396 CCGTCGTCTAGCTCGTCGTGGCGGCGTGAAGCGCATCTCTGGTCTTATTTATGAGGAAAC 455 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | ||| | | | |||||||| |||||| || || ||||| Sbjct 456 TCGTGGTGTGCTGAAGGTTTTCTTGGAAAACGTTATCCGTGATGCAGTCACTTACACCGA 515 Query 16612 GCACGCTAA 16620 ||||| || Sbjct 516 ACACGCCAA 524 >seq3746 Length=35638 Score = 129 bits (142), Expect = 9e-26 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | |||||| ||||||||||| || || |||||||| ||||| Sbjct 28068 CGCCAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCGGCTAT 28009 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||||||||||||||| ||||| ||| |||| || ||| |||||||||| | Sbjct 28008 TCGCCGTCTGGCTCGTCGTGGTGGCGTCAAACGTATCTCCGGTTTGATCTATGAAGAAAC 27949 Query 16552 TCGTGATGT 16560 |||| ||| Sbjct 27948 CCGTGGTGT 27940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79033045875765