Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq61 484 8e-132 seq2872 288 1e-72 >seq61 Length=55249 Score = 484 bits (536), Expect = 8e-132 Identities = 1247/1883 (66%), Gaps = 30/1883 (2%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62224 || || ||| | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 62225 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||||||| |||||| | | ||||||||| | | | | ||| |||| || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 62460 |||||| |||| || || ||||| ||||| || ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 62461 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62518 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 62519 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62577 ||| || ||||| || || || | | || | || | | Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 62697 | |||||||||||||||| || ||| || | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 62698 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62757 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 62758 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62817 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 62818 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62874 ||||| ||| || || || ||||||||||| ||||| ||| ||| Sbjct 27173 TTCTGGTGACAGTT---TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTG 27117 Query 62875 ---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 | |||||||| |||||||| | ||||||| ||| || ||||| | ||||| | Sbjct 27116 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 27057 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 ||| ||||| | || |||||||| || || || || ||||| || || | ||| || | Sbjct 27056 CCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 26997 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 |||| ||||| |||| || | ||||| | || ||| | ||||| ||||| |||| | Sbjct 26996 GATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 26937 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTT 63110 ||||||| | ||| || | ||| | | | || || || | | |||||| || | Sbjct 26936 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 26877 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | || ||||| |||||||| || || || || |||||||| | ||||| || Sbjct 26876 -CGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 26818 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||| | | ||||||| || |||||| || | | ||| ||| || |||||||| Sbjct 26817 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAAC 26758 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 26757 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 26698 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| Sbjct 26697 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 26638 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | | || || || ||| || || ||||| | || | ||| |||||| | ||| Sbjct 26637 AAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 26578 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 || | ||| || | | ||| ||||| | ||||| || || |||| || | || || Sbjct 26577 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 26518 Query 63471 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 26517 GCACGAATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 26460 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAA 63587 | | | | | | | || || || ||| ||| | || |||||| || ||| Sbjct 26459 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCATTGTTAA-AAGGAAA 26401 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || ||||| ||| ||||| | || | ||| |||||| || || || || |||||| Sbjct 26400 CACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCGTA 26341 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 || | ||| || | |||||||| ||||| | ||| || || || || ||| Sbjct 26340 AAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGG 26281 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || || Sbjct 26280 ATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATC 26221 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 || | ||| || || || | || || || |||||||||||||| ||| || || Sbjct 26220 TTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACGA 26161 Query 63828 TCGTAAATAATAACCGAGTTGAG 63850 || || || || | ||||| || Sbjct 26160 TCATAGATGATCGCTGAGTTCAG 26138 >seq2872 Length=9359 Score = 288 bits (318), Expect = 1e-72 Identities = 574/844 (68%), Gaps = 11/844 (1%) Strand=Plus/Plus Query 33002 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33061 |||||||||| || ||||||||||| || ||||| || || ||||| || |||| Sbjct 2976 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 3035 Query 33062 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 33121 | || || | |||||||| || ||||| | || ||||| || | ||| | Sbjct 3036 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAA 3095 Query 33122 ATTCAGAAATCAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||| | |||| | ||| ||||| || || |||||| ||||| |||| | Sbjct 3096 GCTCA---ACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 3152 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| || || | || || || || || | || || || || || ||||| | || | Sbjct 3153 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAG 3212 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 |||| ||||| || | | | ||| ||| || | |||| ||||||| |||| Sbjct 3213 CATCCGTTATGATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACA 3272 Query 33299 TCAAACAT-GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | || || || || || || |||||||| || || | | || | ||||||||| || Sbjct 3273 T-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAAT 3331 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || ||||| ||||| || |||||||| || ||||| || ||||| || || ||| Sbjct 3332 GTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTG 3391 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 33476 |||||||| ||||| || |||||||| ||||||| | || ||| | ||| || || Sbjct 3392 AAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTC 3451 Query 33477 --ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | ||||| ||||||| || |||||| || ||| ||||||||||| ||| Sbjct 3452 GAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATG 3511 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||||| |||||||||| | | || | ||| | | ||| || || || | | ||| Sbjct 3512 GCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTG 3571 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| ||||| | || || ||||| ||||| || || || || || | |||||| Sbjct 3572 TACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCG 3631 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | ||| |||||| | ||| ||||| ||| |||||| || || ||||| ||| Sbjct 3632 GTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAA 3691 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || ||||| || ||||| ||||| ||| |||| || | || || || | Sbjct 3692 GCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCC 3751 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||||| | || || || || | ||| |||||||| || ||||| || ||||| || ||| Sbjct 3752 CAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGCC 3811 Query 33835 TTTT 33838 | || Sbjct 3812 TGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622588187741800