Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq61 183 3e-41 seq4710 129 6e-25 seq4983 118 1e-21 SEQ10860 107 2e-18 seq2624 91.5 1e-13 >seq61 Length=55249 Score = 183 bits (202), Expect = 3e-41 Identities = 718/1116 (64%), Gaps = 36/1116 (3%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 ||||| || || | ||||| |||| ||| || || | || | ||| || || | Sbjct 27663 TGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATAC 27604 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || ||||| ||||| ||||| |||| ||| || || || | ||| |||||||| || Sbjct 27603 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCT 27544 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 || | | || || | | ||| |||| ||||| | ||||| | | ||||||| Sbjct 27543 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 27484 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || || || || ||||||||| |||||||||| ||| |||| ||| | || Sbjct 27483 CAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGA 27424 Query 145295 CTGCCTTGAAAGGAACTGTA---ACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTC 145350 | || ||| || || | || ||||| || ||||| ||||| ||||| Sbjct 27423 CAACCAGCGTAGGTTTCATAGGGACCGTCC----TTTTGAGCCAGCTCACAACTGGCCTC 27368 Query 145351 CAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCT 145410 || || || | || || || ||| || ||| ||||||| | |||| || || Sbjct 27367 AAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACT 27308 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 ||| || || | |||| ||| | || || ||||| | ||||| | || | ||| || Sbjct 27307 CTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAAT 27248 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTC 145527 ||| |||||| | | ||| || | ||| ||| | ||||| ||| || Sbjct 27247 GGGACGATGTCTTAAATTGGATTTCTTTGCC---TCGGGCAGCGGATAGTAATTGATATC 27191 Query 145528 GATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC 145587 || ||||| ||||| |||| || || |||| | | || || | || || Sbjct 27190 AATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATC 27131 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 || ||| | || || ||| |||| | ||| ||||| |||||||| || || Sbjct 27130 GAATGTTTTCTC-TGAAGTCACAAACA--TATTCAAGGCTATCGATGCCAAATTGCAGAC 27074 Query 145648 TGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || |||| |||| || || | |||| || || || | ||| | ||||| |||||| Sbjct 27073 GGCAATCTCATCGG-GT-GCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTG 27016 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| || | ||| |||||||| || ||||||||||| | ||||||| ||||||||||| Sbjct 27015 ATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTAC 26956 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCAC-----GATAAAACGGTGCAAGTCCTGCGCAC 145820 || ||||||||| || || | || || ||| | | | || || | Sbjct 26955 GGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATC 26896 Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 ||| ||| ||| ||||| ||||| || | || |||| |||||| | Sbjct 26895 ACACGATTTGC-----GCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCAT 26841 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 || | || || |||||||||||||| ||||||| ||||||||| | | | Sbjct 26840 CCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCAT 26781 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000 |||| | || |||| |||||||| ||| || | ||||| ||||| | | || || | Sbjct 26780 TGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAG 26721 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059 || || || || ||| |||| || | | ||| || | | |||| || | Sbjct 26720 CTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTC-AAAGATATCGGAA 26662 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACG 146116 ||||| ||||| | || | ||| | || ||| ||| || |||||| || || || Sbjct 26661 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACA 26602 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 | ||| ||| || ||||| || | | ||||||| Sbjct 26601 TAACGAGCCACATTATTAAACACTCTGAGCATGGGC 26566 >seq4710 Length=78879 Score = 129 bits (142), Expect = 6e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGG-TCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||| |||| ||||||||| || || | || |||||||||| || |||||||| || Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||| | | ||| | ||||| | | ||| | Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| || ||||| Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830 >seq4983 Length=3163 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 643 GCCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 702 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || | |||||| || ||| |||| ||||||||||| || || || Sbjct 703 GAGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 762 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | ||| | ||||| | || ||| | Sbjct 763 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAAC 822 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || | || ||||| || |||||||| Sbjct 823 CTCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870 >SEQ10860 Length=7223 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||| || || | || ||||| ||||| || ||||||||| Sbjct 1454 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 1513 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | |||||||| || |||| |||||||| || || ||||| Sbjct 1514 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 1573 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | ||||| | | |||| Sbjct 1574 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGAC 1632 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| ||||| || ||||| Sbjct 1633 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq2624 Length=22741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 51808 ATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCA 51867 ||||| || | |||||||| || |||||| | ||||||| || || ||||| Sbjct 4332 ATGTTTCCCAAATCGCCCAGATGACGCTCGTTGTCTGTGGGTGCACCATGCTGTTTCTTG 4391 Query 51868 AGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGC 51927 ||||||||||||| | |||||||| ||||| || | ||| |||||| ||||| ||| Sbjct 4392 TGGGGATTAAAGTGTGCTCCGGCGGATGTGCAGCCACTTGTGGAGTCGCCAAACTCATGC 4451 Query 51928 ACGTGAAAGCCGTGCAGTCC 51947 || |||||||| || || || Sbjct 4452 ACATGAAAGCCATGTAGACC 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471740773123200