Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value SEQ15269 150 1e-31 seq80 136 3e-27 SEQ10860 91.5 1e-13 seq4710 84.2 1e-11 >SEQ15269 Length=11664 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | || || ||||| | || ||||| ||||| |||||||| |||||| Sbjct 3574 ATGGCGACCGTCAATGTGAATCGCAGCGTTACGGACATCTTCTATCGCTACAAGATGCCG 3633 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| |||||||| ||||| ||||| || || || || |||||| | ||||||| Sbjct 3634 CG--TCTGCAGGCCAAGGTTGAGGGCAAGGGCAATGGCATCAAGACCGTCCTGGTCAACA 3691 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || | || || || || |||| ||||| |||||||| ||||| || || || || | Sbjct 3692 TGGCCGAGGTGGCGCGTGCTATCGGCCGCCCGGCCACCTATCCGACCAAGTACTTTGGTT 3751 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| | || |||||||||||||| ||||| || Sbjct 3752 GCGAATTGGGTGCTCAGACGCAGTTCGATCATAA 3785 Score = 122 bits (134), Expect = 6e-23 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 6369 CACA-ANAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACT 6426 |||| | || || |||||||| || || || |||||| | | || |||||||||||| Sbjct 4096 CACACAGAATGAACGCTTCATTGTGAATGGCTCGCATGA-TGTGAACAAGCTGCAGGATC 4154 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||| ||| Sbjct 4155 TGCTCGATGGCTTCATACGCAAATTTGTGCTGTGCCCCGAATGCGATAATCCGGAAACCA 4214 Query 6487 AGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACC 6546 | | | ||| || |||||| | ||||| || || ||||| || ||||||| || Sbjct 4215 ACTTGACTGTCTCGGCCAAGAATCAAACCATTTCGCAATCGTGCAAGGCTTGCGGTTTCC 4274 Query 6547 ATGGCAAGCT--GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||||| ||| | || || || || | ||||| | ||| |||||||||| ||| Sbjct 4275 ATGGCCTGCTCAAGGTTAAT--CATAAGGTGAACACGTACATTGTGAAGAATCCACCA 4330 >seq80 Length=4918 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1405 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1464 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1465 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1499 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3747 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 3806 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 3807 GGTTATATTTAG 3818 >SEQ10860 Length=7223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | |||||| || | || ||| ||||| ||||||||||| || Sbjct 1453 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 1512 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || ||||| || |||||||| || | || |||||||| | || Sbjct 1513 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 1572 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | | ||||| | || ||| | Sbjct 1573 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATC-CGACGGTTCGA 1631 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || |||||||| | |||||| ||||| || ||||| Sbjct 1632 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq4710 Length=78879 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||||| | || ||||| |||||| || ||| || |||||| || || ||||| || Sbjct 8601 TACCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCT 8660 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| | || | || || | || || || || || || || || || ||||| | | Sbjct 8661 GACAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGG 8720 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| ||||| || || ||||||||||| | ||||| || Sbjct 8721 GGGATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCC 8780 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | || || || || || |||| ||| |||||||| || ||||| || Sbjct 8781 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 8833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334758991598255