Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value SEQ13951 441 3e-119 SEQ22413 152 2e-32 SEQ32968 149 3e-31 SEQ43844 100 1e-16 >SEQ13951 Length=2429 Score = 441 bits (488), Expect = 3e-119 Identities = 591/817 (72%), Gaps = 9/817 (1%) Strand=Plus/Minus Query 65413 TATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAAT 65472 |||||| | ||| ||| || |||||||| |||| |||| ||||||| || || || || Sbjct 1968 TATCGCGATCAACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGAT 1909 Query 65473 CTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGGCCAATGCGCA 65532 |||||| || || || || || ||| | || | || ||||| || ||| | ||||| Sbjct 1908 CTACGGTCCGGAGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCA 1849 Query 65533 GAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGC 65592 ||||| ||| |||| |||||||| ||||||||| |||||| |||| ||||| |||||||| Sbjct 1848 GAAGGGCGGCGGCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGC 1789 Query 65593 CAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCA 65652 ||| ||||| |||||| ||||||||| | || ||||||||||| |||||||| Sbjct 1788 GAAGAACCTCGGGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCA 1729 Query 65653 GGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGA 65712 ||| || ||||||| ||| | |||||| ||| |||| | | |||| |||| || || Sbjct 1728 GGCACTCGAGATCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGA 1669 Query 65713 CTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGT 65772 ||| || ||||| ||| ||| || ||| |||| || || || || ||||||||||| Sbjct 1668 CTCGGTCGCGGCGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGT 1609 Query 65773 CGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATC-TCCA 65831 ||| ||||| || ||||||||| ||||| |||||||| | || || | || ||| Sbjct 1608 CGGTCTGCAGGCCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCA 1549 Query 65832 GCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCT 65891 | ||| ||| | ||| |||||||| | |||||||||||||| |||| | Sbjct 1548 G-ACCGGCACCACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGT 1493 Query 65892 ACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCA 65951 ||| || |||||||| |||||||||||||| ||| ||||||||| || |||||| Sbjct 1492 TCGGTTCGCCGGAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCT 1433 Query 65952 TGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCC 66011 || |||| || || || ||||| || | || || ||||| ||||| ||| Sbjct 1432 GCGACATCCGGCGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCA 1373 Query 66012 GGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCG 66071 | ||||| |||||||||||||| | | |||||| | | |||||| ||| ||| Sbjct 1372 AGATGAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCC 1313 Query 66072 TGTACGGGGAGGGCATCTCGCGTGA--GGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG 66129 | ||||| |||||||||| || || |||||| || ||||||||| |||| | || Sbjct 1312 TCTACGGACAGGGCATCTCCCGGGAAGGGTCGA--TCATCGACCTGGGCGTGGACAACGG 1255 Query 66130 CCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAGGGCAA 66189 ||| | |||||||| ||| |||||| || ||| || | | | | | |||||||| Sbjct 1254 ACTGATCAAGAAGTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAA 1195 Query 66190 GCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGAC 66226 | |||||| | ||| ||||||| ||||||||| Sbjct 1194 GGAGAAGGCCCGCGAGTTCCTCAAGGAGAACCCGGAC 1158 >SEQ22413 Length=7522 Score = 152 bits (168), Expect = 2e-32 Identities = 221/311 (71%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 59264 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59323 ||||||||| ||| || ||||||||| |||| | ||||| | || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 59324 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 59380 |||||||| || | |||| || ||| |||| | ||| |||| ||||||| Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 59381 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGG 59440 ||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| || Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 59441 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 59496 | ||||| || || ||| | || || ||||| | || | | |||| || ||| Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439 Query 59497 TTCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 59556 | ||||||| ||||| || ||||||||||| ||||||||||| |||||| ||||| Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379 Query 59557 CCGTCGCTGCG 59567 || |||||||| Sbjct 3378 CCCTCGCTGCG 3368 >SEQ32968 Length=2597 Score = 149 bits (164), Expect = 3e-31 Identities = 236/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 59264 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59323 ||||||||| ||| || ||| || || ||| ||| | |||| ||| |||| Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113 Query 59324 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 59377 | |||||| ||||| ||| |||| | ||| || |||| | || ||| |||| Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056 Query 59378 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGG 59437 ||||||| || || |||||| |||||| | |||||||| | |||||||||||||| | Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996 Query 59438 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59497 || | ||| || || || | ||||| ||||| ||| || ||||| |||| Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936 Query 59498 TCGAGACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59557 ||| ||| ||||| || ||||||||||| ||||||||||||| |||||| |||||| Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876 Query 59558 CGTCGCTGCGGTGGGCAACAGCTCGTGTGTCCAAG 59592 |||| || |||| || || || | || ||||| Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 >SEQ43844 Length=619 Score = 100 bits (110), Expect = 1e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 59395 TTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCTCCAGAAA 59454 |||||| || || | | |||||| | || || |||||||||||| | ||||| || || Sbjct 151 TTCCTCACCTTCAACCTGTGGCGCCAGGCAGCGGAGAACGTGGCGAACAGCCTGCACAAG 210 Query 59455 GGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAAGGAGGGC 59514 || | || || ||||| ||| | ||| ||||| |||| |||| | ||| ||| Sbjct 211 GGTGACCGGGTGATCGTCGTCGGCAATCTCCGCCAGCGGTCCTACGAGTCGAAGACCGGC 270 Query 59515 GACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCGGT 59569 |||| ||||||||| |||| | |||| |||||| ||||||| || || |||| Sbjct 271 GACACGCGCACCGTGTACGAGATCGAGGCGGACGAGGTCGGCCCTTCCCTCCGGT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238086942615820