Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008206.2 Length=78296 Score E Sequences producing significant alignments: (Bits) Value SEQ32968 129 3e-25 SEQ22413 91.5 7e-14 >SEQ32968 Length=2597 Score = 129 bits (142), Expect = 3e-25 Identities = 230/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 49005 ACTGTCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCT 49064 ||||||||||| || || || ||| || || | | ||| || ||||||||||| Sbjct 2176 ACTGTCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCG 2117 Query 49065 GTCGCAAACTTCACGGTCGTGTCCAATGACCGT---TTC--CTCAAGGATGGGG-AGTGG 49118 ||||| |||||| |||| ||| | |||| ||| ||| | | | ||||| Sbjct 2116 GTCGCGAACTTCCGCGTCGCGTCAACGCCCCGTCGGTTCGACTCGAAGTCGAACCAGTGG 2057 Query 49119 CAGGATAAGGACCCCGTGTTCCTCCGCTGCAACGTGTGGCGTGAGTACGCTGAGAACGTC 49178 || ||| | |||||||| |||||||||| ||||| || ||| ||||||||| Sbjct 2056 GTCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTC 1997 Query 49179 GCTGAGTCGCTG-ACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAA 49237 || | || ||| ||| | || ||| | ||||||||| ||||| ||| |||||| Sbjct 1996 GCGAACTCCCTGCACAAGGGGGACCGC-GTGATCGTCTCCGGCCGGCTGCGCCAGCGGTC 1938 Query 49238 CTTCGAGGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGG 49297 || ||| ||| ||||| | ||||||||||| | ||| |||||||||| ||| |||| Sbjct 1937 CTACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGG 1878 Query 49298 ACCCGCTCTGCGTTTCGCCACGGCGAAGGT 49327 || |||| || | |||||| || |||| Sbjct 1877 CCCGTCTCTCCGGTACGCCACCGCACAGGT 1848 >SEQ22413 Length=7522 Score = 91.5 bits (100), Expect = 7e-14 Identities = 220/326 (67%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 49009 TCGTCGGTAATCTGACCGCCGACCCCGAGCTGCGATTCACCCCGAGTGGCGCGGCTGTCG 49068 ||||||| || || || ||||||||| |||| | |||||| || || || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 49069 CAAACTTCACGGTCGTGTCCA-ATGAC--CGTTTC--CTCAAGGATGGGG-AGTGGCAGG 49122 | |||||| ||| | |||| | | || ||| |||| || ||||| | Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 49123 ATAAGGACCCCGTGTTCCTCCGCTGCAACGTGTGGCGTGAGTACGCTGAGAACGTCGCTG 49182 | | || || ||||||| ||||||| | ||||| ||| ||||||||||| Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 49183 AGTCGCTG-ACACGCGGCACCACCGTGATCGTCACCGGCAAGCTCTCGCAGCGGAACTTC 49241 | ||| ||| | | ||| ||||||||||||||| | | || ||| || | Sbjct 3494 ACAGCCTGCACAAGGGCGACCGG-GTGATCGTCACCGGCCGGTTGCGTCAACGGTCCTAC 3436 Query 49242 GAGGACCGCGAGGGGAACAAGCGCACCGTCGTGGAGCTGGAGGTCGATGAGATCGGACCC 49301 ||| ||||||||| | ||||||||||| | ||| ||||| ||| ||| |||| ||| Sbjct 3435 GAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGCCCC 3376 Query 49302 GCTCTGCGTTTCGCCACGGCGAAGGT 49327 | ||||| | |||||| || |||| Sbjct 3375 TCGCTGCGCTACGCCACCGCCCAGGT 3350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250281686479585