Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq61 475 4e-129 seq2872 280 2e-70 >seq61 Length=55249 Score = 475 bits (526), Expect = 4e-129 Identities = 1262/1911 (66%), Gaps = 34/1911 (2%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 |||| | |||||||||||| | | || || || || || || ||||| |||||||| Sbjct 28008 TTGTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCT 27949 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 || || || || |||| | | ||||| || |||| ||| || | || Sbjct 27948 GTCTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGTTGGGT 27889 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | || || || | |||||||| || || || || || || | || || ||| Sbjct 27888 TCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCC 27829 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62079 || || || | | ||| | |||||||| | ||||| |||| || | || | || Sbjct 27828 ATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACT-TC 27770 Query 62080 TTCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 | |||| | || | | || || ||||| |||| | || || || |||||| || Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCAT 27710 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 ||||||| |||||| | | ||||||||| | | | | ||| |||| || || | Sbjct 27709 GTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACATT 27650 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 || ||||| ||||| || | || |||||||| || |||||||| || | ||||| Sbjct 27649 GAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTC 27590 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-T 62315 |||||| |||| || || ||||| ||||| || ||||| || || || || | | | | Sbjct 27589 ATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTAC-AAGCAGCGAGT 27531 Query 62316 TTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62373 |||||| || ||| ||| |||||| |||||||| ||||| |||||| | Sbjct 27530 TTCTAACGCC--ATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGCTTGT 27473 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62432 ||| || ||||| || || || | | || | || | | Sbjct 27472 GGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAA-CCAGCGT 27414 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 | || || || || || ||||| | ||| || |||||||| ||||| | ||||| || | Sbjct 27413 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 27354 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAAT 62552 | |||||||||||||||| || ||| || | |||| || ||| | ||| || Sbjct 27353 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAAC 27294 Query 62553 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62612 | ||||| || ||||| || || || ||||| ||||| || || || | |||||| Sbjct 27293 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 27234 Query 62613 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62672 ||| || | | || || || | ||||| ||||| ||||| || ||||| || | || Sbjct 27233 AATTGGATTTCTTTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAAT 27174 Query 62673 TTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62729 ||||| ||| || || || ||||||||||| ||||| ||| ||| Sbjct 27173 TTCTGGTGACAGTT---TTAGTAACTTCCTTCAGTTTCTTGAAATCGAATGTTTTCTCTG 27117 Query 62730 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 | |||||||| ||||| || | ||||||| ||| || ||||| | ||||| | Sbjct 27116 AAGTCACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTG 27057 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 ||| ||||| | || |||||||| || || || || |||||||| || | ||| || | Sbjct 27056 CCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCT 26997 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 |||| ||||| |||| || | ||||| | || ||| | ||||| ||||| |||| | Sbjct 26996 GATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTT 26937 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTT 62965 ||||||| | ||| || | ||| | | | || || || | | |||||| | | Sbjct 26936 GAGATTCAACAATGGCATACCAAAGAGTTTGTGCTTTAATCACACGATTTGCGCGACCCT 26877 Query 62966 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCA 63025 | || ||||| |||||||| || || || || |||||||| | |||| || Sbjct 26876 -CGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCG 26818 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 ||||| | | ||||||| || |||||| || | | ||| ||| || |||||||| Sbjct 26817 GGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCTTCATAAAC 26758 Query 63086 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145 ||||| || ||||| | || || ||||| | | ||| || || || || || || Sbjct 26757 AGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTG 26698 Query 63146 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63205 |||||||| || || | |||| | | ||||| |||||||| ||||||| ||| ||||| Sbjct 26697 TTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCA 26638 Query 63206 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265 | | | || || || ||| || || ||||| | || | ||| |||||| | ||| Sbjct 26637 AAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACT 26578 Query 63266 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTG 63325 || | ||| || | | |||||| || || ||||| || || |||| || | || || Sbjct 26577 CTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTG 26518 Query 63326 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 |||||||| | | | |||| || || || || || || ||| ||||| | ||| | Sbjct 26517 GCACGAATACAATGCACATTG--AGCCCAATGCCACCAGCGGATTTGGAGATCATTGCAC 26460 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATC---ATCCATCATGTTAAGTAGAA 63440 | | | | | | | ||||| || || ||| | |||| |||||| || | Sbjct 26459 ACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCGGAAACCAT--TGTTAA-AAGGA 26403 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 |||| ||||| ||| ||||| | || | ||| |||||| || || || || || | Sbjct 26402 AACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAACGTTGGCGATGCATGCG 26343 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 |||| | ||| || | |||||||| ||||| | ||| || || || || || Sbjct 26342 TAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCAT 26283 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 | ||||| | || || | ||| | ||||||||| || | ||| |||| ||| || | Sbjct 26282 GGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGA 26223 Query 63621 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 | || | ||| || || || | || || || |||||||||||||| ||| || | Sbjct 26222 TCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCAC 26163 Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 63731 | || || || || | ||||| || ||| | ||| ||||| |||| Sbjct 26162 GATCATAGATGATCGCTGAGTTCAGGCGATCTGAGTTTTTCTTAACGACAT 26112 >seq2872 Length=9359 Score = 280 bits (310), Expect = 2e-70 Identities = 576/848 (68%), Gaps = 19/848 (2%) Strand=Plus/Plus Query 32359 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTA 32418 |||||||||| || ||||||||||| || ||||| || || ||||| || || | Sbjct 2976 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 3035 Query 32419 ATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCA 32478 | || || | |||||||| ||||||||| | || ||||| || | ||| | Sbjct 3036 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAA 3095 Query 32479 ATTCAGAAATCAAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 ||| | |||| | ||| |||||||| || |||||| ||||| |||| | Sbjct 3096 GCTCA---ACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGT 3152 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||| || || | || || || || || | || || || || || ||||||| || | Sbjct 3153 TCATGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAG 3212 Query 32596 CGTCTGTTATAATAGATCTTACTGTTTC-TTC---ACTCGGTGGATACAATAAATGTTTA 32651 | || ||||| ||| | | || | | ||| ||| || | | || ||||||| Sbjct 3213 CATCCGTTAT----GATTTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGG 3268 Query 32652 AACATCAAACAT-GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 ||||| || || || || || || || ||||| || || | | || ||||||||||| Sbjct 3269 AACAT-AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGA 3327 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770 || || ||||| ||||| || |||||||| || ||||| || ||||| ||||| || Sbjct 3328 GAATGTAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCC 3387 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 | ||||| || ||||| || || ||||| ||||||| | || ||| | ||| || Sbjct 3388 ACTGAAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGC 3447 Query 32830 TGTC--ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 || | ||||| ||||||| || |||||| || ||| ||||| || || Sbjct 3448 CTTCGAAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTC 3507 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 || ||||| |||||||||| | | || | ||| | | ||| || ||||| | | Sbjct 3508 AATGGCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCAC 3567 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 ||| |||||||| ||||| | || || ||||| || || || || || ||||| | || Sbjct 3568 ACTGTACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGC 3627 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 |||||| | ||| |||||| | ||| ||||| | | |||||| || || ||||| || Sbjct 3628 CTCGGTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATC 3687 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 | || ||||| || ||||| ||||| ||| |||| || | || || || Sbjct 3688 AGAAGCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTT 3747 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||||||| | || || || || | |||||||||||| || ||||| || ||||| || Sbjct 3748 GGCCCAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTC 3807 Query 33188 TGCCTTTT 33195 |||| || Sbjct 3808 AGCCTGTT 3815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633266829958000