Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 127 2e-24 SEQ17778 116 3e-21 seq4983 100 2e-16 >SEQ10860 Length=7223 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || ||||| ||||||| | || || || || Sbjct 1683 ACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 1624 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || || || || |||| |||| || | ||| ||||||||||| ||||| || Sbjct 1623 TCGGATACCATTGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCC 1568 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || |||||||| | || ||||||||||| ||||| ||||||| |||||| | ||| Sbjct 1567 AGATCAACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGA 1508 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| || || | || || ||||| Sbjct 1507 TTACAATATCCAAAAAGAGTCTACATTGCACTTGGTGCT 1469 >SEQ17778 Length=11298 Score = 116 bits (128), Expect = 3e-21 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 ||| || || ||||| ||| ||||||||||| | || |||| || || || || Sbjct 4245 AAATTTTCGTTTACATCCCTGATAGTTCATATAGCGAATCTTGCCGAATATAGCACGCTC 4186 Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107 || | | | || || | ||| | | |||||||| || ||||||||| ||| || Sbjct 4185 CTTCCATGCGTTATCATGGATACCCCCGACAGACCACATGCAGCCCACATAACCGTTGGG 4126 Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167 |||||| ||||||| ||||| | ||||| || |||||| ||| ||| ||| || Sbjct 4125 ATCGCGGCCATCCAGACTGTATTTGTCGTTCAGCAATATGCTATACTCCAGCGCCTGCTC 4066 Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227 || | |||||||| | || ||||||||||| ||||| | || | || ||||| Sbjct 4065 TGGTGTTTCTGTCCATTCAAGTATCTTCTTGGCCCAATACATTCTCAGAAATCCATGCAT 4006 Query 51228 CTTGCCCTCGCAACGA--AGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275 |||||||| | || |||||| ||| ||||||||||| | ||||| Sbjct 4005 TTTGCCCTC--ATTGACCAGCTGCAATTGCGCCGAGTTCCAAAGGTCGTC 3958 >seq4983 Length=3163 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||||| || ||||||||||| ||||| || || |||| || | || || ||| Sbjct 876 GGAAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAG 817 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || |||||| | ||| || ||| ||||| || || ||||| || Sbjct 816 CCCTCTGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 757 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || || ||||| || || || ||||||| ||| || | ||| Sbjct 756 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGAC 697 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || ||||| Sbjct 696 TACAACATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433084510965575