Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10860 127 2e-24
SEQ17778 116 3e-21
seq4983 100 2e-16
>SEQ10860
Length=7223
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || || || | || ||||| ||||||| | || || || ||
Sbjct 1683 ACGATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 1624
Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| || || || || |||| |||| || | ||| ||||||||||| ||||| ||
Sbjct 1623 TCGGATACCATTGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCC 1568
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|| |||||||| | || ||||||||||| ||||| ||||||| |||||| | |||
Sbjct 1567 AGATCAACAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGA 1508
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| |||||||| || || | || || |||||
Sbjct 1507 TTACAATATCCAAAAAGAGTCTACATTGCACTTGGTGCT 1469
>SEQ17778
Length=11298
Score = 116 bits (128), Expect = 3e-21
Identities = 201/290 (69%), Gaps = 4/290 (1%)
Strand=Plus/Minus
Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047
||| || || ||||| ||| ||||||||||| | || |||| || || || ||
Sbjct 4245 AAATTTTCGTTTACATCCCTGATAGTTCATATAGCGAATCTTGCCGAATATAGCACGCTC 4186
Query 51048 TTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGG 51107
|| | | | || || | ||| | | |||||||| || ||||||||| ||| ||
Sbjct 4185 CTTCCATGCGTTATCATGGATACCCCCGACAGACCACATGCAGCCCACATAACCGTTGGG 4126
Query 51108 ATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTC 51167
|||||| ||||||| ||||| | ||||| || |||||| ||| ||| ||| ||
Sbjct 4125 ATCGCGGCCATCCAGACTGTATTTGTCGTTCAGCAATATGCTATACTCCAGCGCCTGCTC 4066
Query 51168 TGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCAT 51227
|| | |||||||| | || ||||||||||| ||||| | || | || |||||
Sbjct 4065 TGGTGTTTCTGTCCATTCAAGTATCTTCTTGGCCCAATACATTCTCAGAAATCCATGCAT 4006
Query 51228 CTTGCCCTCGCAACGA--AGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275
|||||||| | || |||||| ||| ||||||||||| | |||||
Sbjct 4005 TTTGCCCTC--ATTGACCAGCTGCAATTGCGCCGAGTTCCAAAGGTCGTC 3958
>seq4983
Length=3163
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|||| ||||| || ||||||||||| ||||| || || |||| || | || || |||
Sbjct 876 GGAAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAG 817
Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
| ||||| || |||||| | ||| || ||| ||||| || || ||||| ||
Sbjct 816 CCCTCTGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 757
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| || ||||| | || || ||||| || || || ||||||| ||| || | |||
Sbjct 756 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGAC 697
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || || || |||||
Sbjct 696 TACAACATCCAGAAGGAGTCAACCCTTCACTTGGTGCT 659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433084510965575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |