Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2872 316 2e-81 seq9366 109 6e-19 >seq2872 Length=9359 Score = 316 bits (350), Expect = 2e-81 Identities = 613/894 (69%), Gaps = 23/894 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||| ||||||| |||||| |||||||| | ||||| || |||| || || Sbjct 2929 TTAAAAATCCGCATCTAATGTAAACACATTGTCCAAACGATTCG-ATG--TAACTCC-CA 2984 Query 92802 TTTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | || ||||| || ||||| || || ||||| || || || || |||||||| ||| Sbjct 2985 TGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCA 3044 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 | || | | || ||||||||| | ||| ||| ||| | | | ||| || Sbjct 3045 TCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAGCTCAACCA 3104 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-A 92977 ||| | |||||| ||||| || || || | ||||||| | |||| ||||| || | | Sbjct 3105 ATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCA 3164 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || | || || || || ||||| | ||| || | ||| || || || || | | | Sbjct 3165 AGTTG-ACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATG 3223 Query 93038 ATTTCTATTA------CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091 ||||| || | | | |||| || || || | || | | |||| ||| Sbjct 3224 ATTTCAATGATGCGTTCCCGACTA------GGCCGCTGCACCAAATGTTGGAACAT-AAG 3276 Query 93092 CAC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| ||| | |||||| || || || ||||| || ||| |||||| | Sbjct 3277 CACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAG 3336 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||||| || ||||| ||||| || || || ||||| || ||| || || Sbjct 3337 TCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAA 3396 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || | ||||||||| |||| || || | || Sbjct 3397 GATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGA 3456 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | |||||| || || || ||||| | || | ||||| || || || Sbjct 3457 GATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATT 3516 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || || ||||||| | | ||| | || || || || || | || | ||||| Sbjct 3517 GAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACAT 3576 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||| ||||| ||||||||||| ||||| ||||| || || || || | || || || | Sbjct 3577 TTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCAC 3636 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 |||||||||||| ||| | || || |||||||| || || || ||||| || || || Sbjct 3637 CTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGC 3696 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||| || ||||| | |||| ||| ||||| ||||| ||| ||||||| ||||||| Sbjct 3697 AAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCCAATC 3756 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | | || || || ||||| ||||||||||| ||||| ||||||||||| || Sbjct 3757 AGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 3810 >seq9366 Length=1054 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 873 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 932 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||| |||||||| Sbjct 933 GTGGGTTCGAACCCCACATCTGACAAA 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556539874160200