Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 170 4e-37 seq4710 158 2e-33 seq4983 89.7 9e-13 SEQ29734 84.2 4e-11 >SEQ10860 Length=7223 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||||||| | || |||||||||||||| || |||||||| Sbjct 1454 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 1513 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| || ||||| ||||| || || | | ||||| || || ||| Sbjct 1514 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 1573 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| || ||||| || | | ||| || Sbjct 1574 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACC 1633 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||| || ||||| || ||||| Sbjct 1634 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq4710 Length=78879 Score = 158 bits (174), Expect = 2e-33 Identities = 175/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTA-GCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || || || |||| |||||||| | | || ||||| || |||||||| || || || Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | |||||| || ||||| ||||| | || || || || || Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||||||||| ||||| ||||| || ||| ||||| || | || || || Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| ||||||||| ||||| || |||||||| ||||| || |||||| || Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATTTTG 8834 >seq4983 Length=3163 Score = 89.7 bits (98), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| |||||| ||||| | | ||| || |||||||||||||| || Sbjct 554 ATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGGTTCGACCTCCAAGGTGATGGTCTTA 613 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||||||| |||||||| Sbjct 614 CCAGTCAAGGTCTTGACGAAGATCTGCAT 642 >SEQ29734 Length=4748 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || ||||| |||||||| || || ||||| || ||||||||||| ||||| Sbjct 361 CCTCCGCGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGAC 302 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAG 68335 | || | ||||| || | ||||| || ||||| ||||| Sbjct 301 AAAGTACGACCATCCTCCAGTTGCTTGCCAGCGAAGATGAG 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921091257490600