Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10860 170 4e-37
seq4710 158 2e-33
seq4983 89.7 9e-13
SEQ29734 84.2 4e-11
>SEQ10860
Length=7223
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | |||||||| | || |||||||||||||| || ||||||||
Sbjct 1454 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 1513
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| || ||||| ||||| || || | | ||||| || || |||
Sbjct 1514 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 1573
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| |||||||| || ||||| || ||||| || | | ||| ||
Sbjct 1574 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACC 1633
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || ||||||||||| || ||||| || |||||
Sbjct 1634 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680
>seq4710
Length=78879
Score = 158 bits (174), Expect = 2e-33
Identities = 175/232 (75%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTA-GCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|| || || || |||| |||||||| | | || ||||| || |||||||| || || ||
Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | ||||| || | |||||| || ||||| ||||| | || || || || ||
Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| |||||||||||||| ||||| ||||| || ||| ||||| || | || || ||
Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||| ||||||||| ||||| || |||||||| ||||| || |||||| ||
Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCATTTTG 8834
>seq4983
Length=3163
Score = 89.7 bits (98), Expect = 9e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||||||| |||||| ||||| | | ||| || |||||||||||||| ||
Sbjct 554 ATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGGGTTCGACCTCCAAGGTGATGGTCTTA 613
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || | |||||||||||| ||||||||
Sbjct 614 CCAGTCAAGGTCTTGACGAAGATCTGCAT 642
>SEQ29734
Length=4748
Score = 84.2 bits (92), Expect = 4e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || ||||| |||||||| || || ||||| || ||||||||||| |||||
Sbjct 361 CCTCCGCGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGAC 302
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAG 68335
| || | ||||| || | ||||| || ||||| |||||
Sbjct 301 AAAGTACGACCATCCTCCAGTTGCTTGCCAGCGAAGATGAG 261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921091257490600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |