Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2872 183 6e-41 seq61 131 3e-25 >seq2872 Length=9359 Score = 183 bits (202), Expect = 6e-41 Identities = 478/718 (67%), Gaps = 31/718 (4%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||||||||| || || ||||| || || || || || || |||| | | || | Sbjct 3707 TGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAATCTGGTCGAACGTTTTAGCC 3648 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| |||||| ||||| || ||||| || ||||||||||| ||||| ||||| | Sbjct 3647 AAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATG 3588 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC-CGTCGAG 42599 |||| || || |||| || |||||| |||| || ||| |||||| | || || Sbjct 3587 TGCATTCCGAAATGTA---CAGTGTGCTCATTGACACCTATATCAGGGATCCTCATC-AG 3532 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACT 42657 || || || ||||| ||||| || |||||||| ||| | ||| |||||| |||| Sbjct 3531 CGAGACTATCTCTTCAATGCCATTGAAACGATGCCGGCTG--TTAAGCGGAAGGCAGACT 3474 Query 42658 GGGCGCTCAACTGGATCGAGAGTC-CCGACG-----CAACGTTCGGCGAGAGGCTGGTAG 42711 |||| || |||||| || ||| | |||| || || || | | | | Sbjct 3473 GGGCTCTTTCTTGGATC-----TCTTCGAAGGCTGCCAAC-TTTGGTGAACGTATTATTG 3420 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 | ||| | || || || |||||||||||| || ||| || |||||||||||||| | Sbjct 3419 CTTTTGCTGCTGTTGAAGGCATCTTCTTCAGTGGGAGCTTTGCATCCATCTTCTGGCTGA 3360 Query 42772 AGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || || | ||||| ||||| || ||||| |||||| | ||| | || || | Sbjct 3359 AGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAG 3300 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA-AGCCCTCG 42890 | |||||| | |||||||| || ||||| | || | || || | ||| | Sbjct 3299 GTCTGCATTGTGACTTTGCGGTGCTTATGTTC-----CAACATTTGGTGCAGCGGCCTAG 3245 Query 42891 -AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| || || | ||||| ||||| || ||| || ||| ||||||||||||| Sbjct 3244 TCGGGAACGCATCATTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCAC 3185 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | |||||||||| | || | ||||||||| | || |||| | | || ||| | Sbjct 3184 CGATGCGCTGCCCGTCAACTTGATTGGCATGAACTGTGCTCTGATGTCCGAATATATCGA 3125 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 || ||||| || | || || || | || | || | |||||||| | Sbjct 3124 GTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGAGTGGGCAAGATTTACAACACAAAGAA 3065 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 || ||| || ||||||| ||||| ||||| ||||| |||||||| ||||||||| Sbjct 3064 TCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAG 3007 >seq61 Length=55249 Score = 131 bits (144), Expect = 3e-25 Identities = 565/883 (64%), Gaps = 33/883 (4%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 ||||||| || ||||||| | |||||||| || || | || ||||||| |||| Sbjct 27461 CCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGG 27402 Query 244359 GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418 ||||||| || ||||||| ||| || | || ||||| | ||||||||||| |||| Sbjct 27401 GACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGA 27342 Query 244419 AGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGA 244478 ||||| || || | ||| ||| | | |||| | | ||||| || | Sbjct 27341 AGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAACGCATCAGAATTA 27282 Query 244479 AGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCA 244538 || ||||||| | ||||| ||||| ||||| ||||| | |||| ||||| | Sbjct 27281 AGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCT 27222 Query 244539 TGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA 244598 | || ||||||| || || | ||| || || | ||||| | || | ||||| || Sbjct 27221 TTGCCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGA-CA 27163 Query 244599 ---TGCGGACGACGTCGGCCAGCAGCT-GAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 | | | || || ||| || |||| ||| | | | ||| | | | Sbjct 27162 GTTTTAGTA--ACTTCCTTCAGTTTCTTGAAA-------TCGAATGTTTTCTCTG--AAG 27114 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGA-CGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 |||||||| || | ||| | || || ||| ||||||||||| | ||| || Sbjct 27113 -------TCACAAACATATTCAAGGCTATCGATG-CCAAATTGCAGACGGCAATCTCATC 27062 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 | | || | ||||| || ||||||||||| ||||| ||||||||||| | | Sbjct 27061 GGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATT 27002 Query 244774 CTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| |||||| ||| |||||| | ||||||| |||||||| | || || ||||| Sbjct 27001 CTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACGGAGTGCCAGTCTC 26942 Query 244834 GAGCTGGGCGACGAGGACGCTGTTCCAGAG-GTCCCTAGCCTTGACCGTCCTGCGA---G 244889 | || | | | | | | ||| || || | || || | || ||| | Sbjct 26941 AACTTGAGATTCAACAATGGCATACCAAAGAGTTTGT-GCTTTAA---TCACACGATTTG 26886 Query 244890 CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGT 244949 | ||||| |||||| || ||||| ||| || || ||||| || || | Sbjct 26885 CGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTT 26826 Query 244950 CTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCT 245009 | | |||||| ||| || |||| || ||| || | | ||| || | || Sbjct 26825 CCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCCTCCACACGCT 26766 Query 245010 GCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCG 245069 ||| || || ||||| ||||| | ||| | |||||| || | | || ||||| ||| Sbjct 26765 TCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCT 26706 Query 245070 AGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 ||| |||||||| | || ||||| || ||||||| ||| ||||| || |||| || Sbjct 26705 TGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCAGGT 26646 Query 245130 AGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 | | || | ||||| || |||||| ||| || || || || Sbjct 26645 AAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGAC 26603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943794965514800