Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value SEQ17778 114 1e-20 seq354 104 2e-17 >SEQ17778 Length=11298 Score = 114 bits (126), Expect = 1e-20 Identities = 201/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 37842 TGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCATG 37901 |||||| |||| ||| | ||||| || ||||| || |||||| | | || | ||| Sbjct 3967 TGGAACTCGGCGCAATTGCAGCTGGTCAATGAGGGCAAAATGCATGGATTTCTGAGAATG 4026 Query 37902 TATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTACG 37959 |||||| |||||| || | |||||| | || | | |||| | ||||| | || Sbjct 4027 TATTGGGCCAAGAAGATACTTGAATGGACAGAA-ACAC-CAGAGCAGGCGCTGGAGTATA 4084 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 ||| | || || || || ||||| |||| || || |||||||||||||| || |||| Sbjct 4085 GCATATTGCTGAACGACAAATACAGTCTGGATGGCCGCGATCCCAACGGTTATGTGGGCT 4144 Query 38020 GTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCA 38079 | |||||||| | | || | || |||| || ||| ||| | | || | ||||| Sbjct 4145 GCATGTGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCTATATTCGGCA 4204 Query 38080 AGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAA 38128 ||||||| || |||||||| | |||||| | || ||| ||||||| Sbjct 4205 AGATTCGCTATATGAACTATCAGGGATGTAAACGAAAATTTGATGTTAA 4253 >seq354 Length=2571 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1684 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1743 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1744 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1774 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1684 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1743 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1744 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396839288776210