Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value SEQ14209 883 0.0 SEQ41758 178 4e-40 >SEQ14209 Length=5568 Score = 883 bits (978), Expect = 0.0 Identities = 1229/1729 (71%), Gaps = 18/1729 (1%) Strand=Plus/Minus Query 41515 GACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCC 41574 ||||||||||||| |||||||||| | | | || || || |||||||| || ||| Sbjct 2407 GACGTCGTCGATGGTGCCGAGCACGGCGATAACCGGGGTCGGCAGGATCGGCTCGGAGCC 2348 Query 41575 GGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCC 41634 ||||||||||||||| |||||||| ||||| ||||||||| | ||||| | | || Sbjct 2347 GGTCTGGTTGTAGAAGGAGACGTTGCCGCCGGTGACCGGGATACCCAGTTCCACGGCACC 2288 Query 41635 GTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATGACCTCGGGATTCTCCGGGGA 41694 |||||| || |||| || | || | |||||||||||| ||| ||| | ||| ||||| Sbjct 2287 GTCGGCCAGGCCGTGGACGGCCTCGCGGAACTGCCACATCACCCCGGCGTCCTCGGGGGA 2228 Query 41695 GCCGAAGTTCAGGCAGTCGGTGACCGC-AGTGGGCACGGCGCCGGTGACCGCGACGTTGC 41753 ||||||||| ||||||| || | || | ||| || | ||||| ||| |||||||| Sbjct 2227 GCCGAAGTTGAGGCAGTTGGACAGGGCGACCGGGGTCG-CACCGGTCGCCGAGACGTTGC 2169 Query 41754 GGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGC 41813 ||||||||||||| || || ||| | || || | || |||||| |||| |||||||| Sbjct 2168 GGTAGGCCTCGGCCAGCGCCAGCCGGGCACCGGTGTTCGGGTCCAGCTTCGTGTAGCGGC 2109 Query 41814 CGTTCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTCCTCATCGACGCGGATCATGC 41873 || ||||| ||||||| |||| ||| |||| | |||||| |||| ||| | || || Sbjct 2108 CGGAGGCGTCCGTCGCGACGGCGATGCCGCGGCCGGTCTCCTCGTCGATGCGCAGCACGC 2049 Query 41874 CGGCGTCGTCGGGGAAGCTGAGGGCCGTGTTGCCGAGCACGTAGTAGTCGTACTGGTTCG 41933 ||||||| || ||| ||| ||||||| | || || ||||||||| | | Sbjct 2048 CGGCGTCCGCGTTCTCCGCGAGCACCGAGTTGCCGCGGACATAACGGTCGTACTGCTCGG 1989 Query 41934 TGATCCACGACGTGTCGGC-GAGGTTGGGGGAGCTCACGAGCGCGAGGAACTG-CTCACG 41991 |||| | | || | || ||| |||||| | |||| || | || | || Sbjct 1988 TGATGTAGG-CGCGGGAGCAGAGCGCGGGGGACGCCGCGAGGTCG-GTCACGGTCTTCTT 1931 Query 41992 CAGGACCGCGGGGTCGTTCGAGCGGGAGAGGAGCTCGGCACTGTCGGCCTGCAGGGCGTC 42051 ||| | || | | ||| ||||| ||| ||| | | || | | |||||||| Sbjct 1930 CAGCTCGTCGACGGAGGTCGGGCGGGCGAG---CTCCGG---GGCGACATTGAGGGCGTC 1877 Query 42052 GAGCCAGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCGTGGA 42111 || || || | ||| ||||||||||||||||||||| ||| |||| | | ||| Sbjct 1876 CTGCGTGGCGGGCTTCGCGTAGGGGCGCTCGTAGACCGGGCCCTCGTCGGCCATGGAGGA 1817 Query 42112 CGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGCCGGT 42171 | |||| ||||||||| ||| ||||| ||||||||||| | | || |||| Sbjct 1816 GGCGTCCGCGTCGACGACGACCTCGCCCTGGTGCTCGATGACGAGGTGCTCACCGTCGGT 1757 Query 42172 GACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTC 42231 |||||||||||| |||||| ||||||||||| || || | ||| ||||||||| Sbjct 1756 GACCTCGCCGAGGTCGGAGGCGATGACCTCCCACTTCGCGCAGATGTCGAAGAACGCGTC 1697 Query 42232 GAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTC 42291 ||| || | || | ||| | ||||||||| || ||||| |||||||| ||||| || Sbjct 1696 GAGGTTGTCCGGGGTGACCACGGCCATCATGCGTTCCTGGGACTCCGAGGACAGGATGTC 1637 Query 42292 CTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCT 42351 | ||||||| | | | || ||| | ||||||||||| || |||||| |||| Sbjct 1636 CGCGGCCGTCATGTTCTCGGCACGCAGGTGGACGTTGTCGAGGTTGATGTGCATGCCGCC 1577 Query 42352 GTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTG 42411 || ||| ||| |||||||| ||||||||||| | ||| || | ||||||||||| Sbjct 1576 GTCCCCGGCGGCCGCGAGCTCCGCGGTGGCGCAGGACAGGCCGGCGCCGCCGAGGTCCTG 1517 Query 42412 GATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTC 42471 ||| | |||||| || | ||||| || || |||||||||||||||||||||||||| Sbjct 1516 GATGCCGACGACCACACCGGCACGGTAGAGGTCGAGGCAGCACTCGATGAGCACCTTCTC 1457 Query 42472 GGCGAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 42531 |||||| |||| Sbjct 1456 GGCGAACGGGTCACCGACCTGGACGGCGGGGAGCTTGCGCTCGGCACCCTCCTCGAAGGT 1397 Query 42532 NNNNGAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAG 42591 |||||||||| ||| |||||||||| ||||| ||| ||||| | | ||||||| Sbjct 1396 GTCGGAGGCGAGGACGGACACGCCGCCGATGCCGTCGAGCCCGGTGCGGGACCCGAAGAG 1337 Query 42592 GACGACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCAC 42651 || ||| |||||| ||||| ||| ||||||||||||||| ||| | || Sbjct 1336 GATCACCCGGTTGCCGGTGCCCGAGGCGAAGGCGAGCTTGAGGTCGTCGACCTTCAGGGT 1277 Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTC 42711 ||| || |||||| ||||||||||| ||| | ||| || |||| |||||||| Sbjct 1276 GCCGACGCACAGGGCATTGACCAGCGGGTTGCCGGCGTAGGACGCGGCGAAGACGGTCTC 1217 Query 42712 GCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCC 42771 |||||||| ||||||||| |||||||||||||||||| || || ||| | |||||| Sbjct 1216 GCCGCCGAGGTTCGGCAGGCCGAGGCAGTTGCCGTAGCCGCCGACACCGGCGACGACGCC 1157 Query 42772 GTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGAC 42831 | ||| ||| ||| ||||| | | |||| |||| |||||||||||| |||||| || Sbjct 1156 GGGCAGGACGCGCTGGGTGTCCGCGGCGTCCGCCGGGCCGAAGCGCAGCTGGTCCATCAC 1097 Query 42832 CGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGC 42891 ||||| ||||| |||||||||| ||||||||||||||||||||||| || || || || Sbjct 1096 GGCGACGGGGCGGGCGCCCATGGCCATGATGTCGCGGACGATGCCGCCGACGCCGGTGGC 1037 Query 42892 CGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGAC 42951 ||| |||||| | ||||||| | | || ||||||||||| ||| ||||||| ||||| Sbjct 1036 CGCACCCTGGTACGGCTCGACGTAGGACGGGTGGTTGTGGGACTCGACCTTGAAGGTGAC 977 Query 42952 CGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCG 43011 || || ||||||| |||||||||||||||||||| || || ||| | ||| Sbjct 976 GGCGTTGCCGTCGCCGATGTCGATGACGCCCGCGTTCTCGCCGATGCCGGC---GAGCAT 920 Query 43012 CTCG---CGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGA 43068 || | |||||||| | | ||| ||||| |||| | |||| || Sbjct 919 CTTGGACTGCATCTCGGAGGTGGTGGTCTCACCGAAGTAGCGCAGGTGGGTCTTGGAGGA 860 Query 43069 CTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGG 43128 ||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||| Sbjct 859 CTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATGGCGAGCTCGGCGGCGGTGGG 800 Query 43129 GCGGCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGC 43188 |||||| |||||||||||| ||||| |||||||||| ||||||||||| ||| |||| Sbjct 799 GCGGCGACCGAGGATCTCCCGGATCCGGCCGTACTCGTCCTCCTTGAGGCCGAGCTCCGC 740 Query 43189 GTAGGGCTGCTCCTTCTCCGGAGTCGCGATCGCATTGGCGACCGAGTCG 43237 |||||||||| || || || ||| || |||||||| | |||| Sbjct 739 CCAGGGCTGCTCGAGGTCGGGGGTGGCGGCGGCGTTGGCGACAGTGTCG 691 >SEQ41758 Length=3082 Score = 178 bits (196), Expect = 4e-40 Identities = 195/257 (76%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 46035 CCGTCGCCGCGTTCCAGACGTTCCGGGACTCGGCTATCTTCACC-ACGAAGCGGCTCATC 46093 || ||||||||| | |||| ||||| || || || |||||||| || | ||||||||| Sbjct 1765 CCATCGCCGCGTACAAGACCTTCCGCGATTCCGCCGTCTTCACCGACCGA-CGGCTCATC 1823 Query 46094 GTGCGGGACGCCCAGGGCATGACAGGACGGAAGGTTGAGATCTACTCCCTCCCATACTCC 46153 || ||||||||||||||| || || |||||| ||||| ||||| || || |||||| Sbjct 1824 GTCCGGGACGCCCAGGGCCTGCGCGGCAAGAAGGTCGAGATGTACTCGCTGCCGTACTCC 1883 Query 46154 GCGATCAACATGTGGTCGTCGGAGAACGCGGGCAAGCTCGACTTCAACTCGGAGATCGAG 46213 |||||||||||||||| ||||||||||| || | ||| ||||||| | ||| | ||| Sbjct 1884 TCGATCAACATGTGGTCCTCGGAGAACGCCGGAACGCTGGACTTCACGGCAGAGCTGGAG 1943 Query 46214 CTCTGGACGCGCGCGGGTCACATCAAGGTGAAGCTCGGCAAGGGGGCCGACGTGCGCCGC 46273 || ||||| || || || | |||||| | ||||||| || | ||||| || ||| Sbjct 1944 CTGTGGACCCGGGCCGGGAAGATCAAGATCGGGCTCGGCCGCGGCGTGGACGTCCGTCGC 2003 Query 46274 ATCGACAGCCTGATCGC 46290 ||||| || ||||| Sbjct 2004 CTCGACCAGCTCATCGC 2020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148165235559270