Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_009603.1
Length=46365
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14209 883 0.0
SEQ41758 178 4e-40
>SEQ14209
Length=5568
Score = 883 bits (978), Expect = 0.0
Identities = 1229/1729 (71%), Gaps = 18/1729 (1%)
Strand=Plus/Minus
Query 41515 GACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGGCACGTCGCC 41574
||||||||||||| |||||||||| | | | || || || |||||||| || |||
Sbjct 2407 GACGTCGTCGATGGTGCCGAGCACGGCGATAACCGGGGTCGGCAGGATCGGCTCGGAGCC 2348
Query 41575 GGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGCGTAGCAGCC 41634
||||||||||||||| |||||||| ||||| ||||||||| | ||||| | | ||
Sbjct 2347 GGTCTGGTTGTAGAAGGAGACGTTGCCGCCGGTGACCGGGATACCCAGTTCCACGGCACC 2288
Query 41635 GTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATGACCTCGGGATTCTCCGGGGA 41694
|||||| || |||| || | || | |||||||||||| ||| ||| | ||| |||||
Sbjct 2287 GTCGGCCAGGCCGTGGACGGCCTCGCGGAACTGCCACATCACCCCGGCGTCCTCGGGGGA 2228
Query 41695 GCCGAAGTTCAGGCAGTCGGTGACCGC-AGTGGGCACGGCGCCGGTGACCGCGACGTTGC 41753
||||||||| ||||||| || | || | ||| || | ||||| ||| ||||||||
Sbjct 2227 GCCGAAGTTGAGGCAGTTGGACAGGGCGACCGGGGTCG-CACCGGTCGCCGAGACGTTGC 2169
Query 41754 GGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGC 41813
||||||||||||| || || ||| | || || | || |||||| |||| ||||||||
Sbjct 2168 GGTAGGCCTCGGCCAGCGCCAGCCGGGCACCGGTGTTCGGGTCCAGCTTCGTGTAGCGGC 2109
Query 41814 CGTTCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTCCTCATCGACGCGGATCATGC 41873
|| ||||| ||||||| |||| ||| |||| | |||||| |||| ||| | || ||
Sbjct 2108 CGGAGGCGTCCGTCGCGACGGCGATGCCGCGGCCGGTCTCCTCGTCGATGCGCAGCACGC 2049
Query 41874 CGGCGTCGTCGGGGAAGCTGAGGGCCGTGTTGCCGAGCACGTAGTAGTCGTACTGGTTCG 41933
||||||| || ||| ||| ||||||| | || || ||||||||| | |
Sbjct 2048 CGGCGTCCGCGTTCTCCGCGAGCACCGAGTTGCCGCGGACATAACGGTCGTACTGCTCGG 1989
Query 41934 TGATCCACGACGTGTCGGC-GAGGTTGGGGGAGCTCACGAGCGCGAGGAACTG-CTCACG 41991
|||| | | || | || ||| |||||| | |||| || | || | ||
Sbjct 1988 TGATGTAGG-CGCGGGAGCAGAGCGCGGGGGACGCCGCGAGGTCG-GTCACGGTCTTCTT 1931
Query 41992 CAGGACCGCGGGGTCGTTCGAGCGGGAGAGGAGCTCGGCACTGTCGGCCTGCAGGGCGTC 42051
||| | || | | ||| ||||| ||| ||| | | || | | ||||||||
Sbjct 1930 CAGCTCGTCGACGGAGGTCGGGCGGGCGAG---CTCCGG---GGCGACATTGAGGGCGTC 1877
Query 42052 GAGCCAGGTCGGGTAGGCGACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCGTGGA 42111
|| || || | ||| ||||||||||||||||||||| ||| |||| | | |||
Sbjct 1876 CTGCGTGGCGGGCTTCGCGTAGGGGCGCTCGTAGACCGGGCCCTCGTCGGCCATGGAGGA 1817
Query 42112 CGGGTCCACGTCGACGATCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGCCGGT 42171
| |||| ||||||||| ||| ||||| ||||||||||| | | || ||||
Sbjct 1816 GGCGTCCGCGTCGACGACGACCTCGCCCTGGTGCTCGATGACGAGGTGCTCACCGTCGGT 1757
Query 42172 GACCTCGCCGAGCACGGAGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTC 42231
|||||||||||| |||||| ||||||||||| || || | ||| |||||||||
Sbjct 1756 GACCTCGCCGAGGTCGGAGGCGATGACCTCCCACTTCGCGCAGATGTCGAAGAACGCGTC 1697
Query 42232 GAGCTTCGCAGGCGAGACGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTC 42291
||| || | || | ||| | ||||||||| || ||||| |||||||| ||||| ||
Sbjct 1696 GAGGTTGTCCGGGGTGACCACGGCCATCATGCGTTCCTGGGACTCCGAGGACAGGATGTC 1637
Query 42292 CTCGGCCGTGAGCGAGGGGTCGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCT 42351
| ||||||| | | | || ||| | ||||||||||| || |||||| ||||
Sbjct 1636 CGCGGCCGTCATGTTCTCGGCACGCAGGTGGACGTTGTCGAGGTTGATGTGCATGCCGCC 1577
Query 42352 GTTGCCGTTGGCGGCGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTG 42411
|| ||| ||| |||||||| ||||||||||| | ||| || | |||||||||||
Sbjct 1576 GTCCCCGGCGGCCGCGAGCTCCGCGGTGGCGCAGGACAGGCCGGCGCCGCCGAGGTCCTG 1517
Query 42412 GATCGCCTCGACCAGCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTC 42471
||| | |||||| || | ||||| || || ||||||||||||||||||||||||||
Sbjct 1516 GATGCCGACGACCACACCGGCACGGTAGAGGTCGAGGCAGCACTCGATGAGCACCTTCTC 1457
Query 42472 GGCGAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 42531
|||||| ||||
Sbjct 1456 GGCGAACGGGTCACCGACCTGGACGGCGGGGAGCTTGCGCTCGGCACCCTCCTCGAAGGT 1397
Query 42532 NNNNGAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAG 42591
|||||||||| ||| |||||||||| ||||| ||| ||||| | | |||||||
Sbjct 1396 GTCGGAGGCGAGGACGGACACGCCGCCGATGCCGTCGAGCCCGGTGCGGGACCCGAAGAG 1337
Query 42592 GACGACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCAC 42651
|| ||| |||||| ||||| ||| ||||||||||||||| ||| | ||
Sbjct 1336 GATCACCCGGTTGCCGGTGCCCGAGGCGAAGGCGAGCTTGAGGTCGTCGACCTTCAGGGT 1277
Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTC 42711
||| || |||||| ||||||||||| ||| | ||| || |||| ||||||||
Sbjct 1276 GCCGACGCACAGGGCATTGACCAGCGGGTTGCCGGCGTAGGACGCGGCGAAGACGGTCTC 1217
Query 42712 GCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCC 42771
|||||||| ||||||||| |||||||||||||||||| || || ||| | ||||||
Sbjct 1216 GCCGCCGAGGTTCGGCAGGCCGAGGCAGTTGCCGTAGCCGCCGACACCGGCGACGACGCC 1157
Query 42772 GTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGAC 42831
| ||| ||| ||| ||||| | | |||| |||| |||||||||||| |||||| ||
Sbjct 1156 GGGCAGGACGCGCTGGGTGTCCGCGGCGTCCGCCGGGCCGAAGCGCAGCTGGTCCATCAC 1097
Query 42832 CGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGC 42891
||||| ||||| |||||||||| ||||||||||||||||||||||| || || || ||
Sbjct 1096 GGCGACGGGGCGGGCGCCCATGGCCATGATGTCGCGGACGATGCCGCCGACGCCGGTGGC 1037
Query 42892 CGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGAC 42951
||| |||||| | ||||||| | | || ||||||||||| ||| ||||||| |||||
Sbjct 1036 CGCACCCTGGTACGGCTCGACGTAGGACGGGTGGTTGTGGGACTCGACCTTGAAGGTGAC 977
Query 42952 CGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCG 43011
|| || ||||||| |||||||||||||||||||| || || ||| | |||
Sbjct 976 GGCGTTGCCGTCGCCGATGTCGATGACGCCCGCGTTCTCGCCGATGCCGGC---GAGCAT 920
Query 43012 CTCG---CGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGA 43068
|| | |||||||| | | ||| ||||| |||| | |||| ||
Sbjct 919 CTTGGACTGCATCTCGGAGGTGGTGGTCTCACCGAAGTAGCGCAGGTGGGTCTTGGAGGA 860
Query 43069 CTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGG 43128
||||||||||||||||||||||||||||||||||||||| || |||||| | | ||||||
Sbjct 859 CTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATGGCGAGCTCGGCGGCGGTGGG 800
Query 43129 GCGGCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGC 43188
|||||| |||||||||||| ||||| |||||||||| ||||||||||| ||| ||||
Sbjct 799 GCGGCGACCGAGGATCTCCCGGATCCGGCCGTACTCGTCCTCCTTGAGGCCGAGCTCCGC 740
Query 43189 GTAGGGCTGCTCCTTCTCCGGAGTCGCGATCGCATTGGCGACCGAGTCG 43237
|||||||||| || || || ||| || |||||||| | ||||
Sbjct 739 CCAGGGCTGCTCGAGGTCGGGGGTGGCGGCGGCGTTGGCGACAGTGTCG 691
>SEQ41758
Length=3082
Score = 178 bits (196), Expect = 4e-40
Identities = 195/257 (76%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 46035 CCGTCGCCGCGTTCCAGACGTTCCGGGACTCGGCTATCTTCACC-ACGAAGCGGCTCATC 46093
|| ||||||||| | |||| ||||| || || || |||||||| || | |||||||||
Sbjct 1765 CCATCGCCGCGTACAAGACCTTCCGCGATTCCGCCGTCTTCACCGACCGA-CGGCTCATC 1823
Query 46094 GTGCGGGACGCCCAGGGCATGACAGGACGGAAGGTTGAGATCTACTCCCTCCCATACTCC 46153
|| ||||||||||||||| || || |||||| ||||| ||||| || || ||||||
Sbjct 1824 GTCCGGGACGCCCAGGGCCTGCGCGGCAAGAAGGTCGAGATGTACTCGCTGCCGTACTCC 1883
Query 46154 GCGATCAACATGTGGTCGTCGGAGAACGCGGGCAAGCTCGACTTCAACTCGGAGATCGAG 46213
|||||||||||||||| ||||||||||| || | ||| ||||||| | ||| | |||
Sbjct 1884 TCGATCAACATGTGGTCCTCGGAGAACGCCGGAACGCTGGACTTCACGGCAGAGCTGGAG 1943
Query 46214 CTCTGGACGCGCGCGGGTCACATCAAGGTGAAGCTCGGCAAGGGGGCCGACGTGCGCCGC 46273
|| ||||| || || || | |||||| | ||||||| || | ||||| || |||
Sbjct 1944 CTGTGGACCCGGGCCGGGAAGATCAAGATCGGGCTCGGCCGCGGCGTGGACGTCCGTCGC 2003
Query 46274 ATCGACAGCCTGATCGC 46290
||||| || |||||
Sbjct 2004 CTCGACCAGCTCATCGC 2020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148165235559270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |