Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009799.3 Length=42972 Score E Sequences producing significant alignments: (Bits) Value SEQ27525 179 1e-40 >SEQ27525 Length=13899 Score = 179 bits (198), Expect = 1e-40 Identities = 281/402 (70%), Gaps = 0/402 (0%) Strand=Plus/Minus Query 10444 GCAAACCGCAGCGGATCTAGCCGATAATTTCCTAGGCTTCTCACGTACTTTTGACGTTGA 10503 ||| ||||| | || || || ||||| ||||| | |||| | || || | ||| Sbjct 1800 GCAGACCGCGGGCGACCTCGCTGATAACTTCCTCGCCTTCACGGACACGTTCGGCGTGTC 1741 Query 10504 CCTCGCCGAAGCAACTCAGACGGCCGGGCAACTTATCCTTAACGGGCTTGCCACCGACGT 10563 | | || || || ||||| || ||||| || | | |||||||||||| | || || Sbjct 1740 GATGGAGGAGGCGACGCAGACTGCGGGGCAGCTGCTGCAGAACGGGCTTGCCCCGGATGT 1681 Query 10564 AGAAGACGCAGCCGATCTTATGGTTACGGCTATGCAACGCGTCCCCGCTCAGATGCGCGA 10623 || || || ||||| ||| | || | || || || || || |||||| || Sbjct 1680 GGAGTCGGCGGCTGATCTGATGACGTCTGCGTTCCAGCGGGTGCCTGCGGCGATGCGTGA 1621 Query 10624 CGAGCTACCGGAAATCATTAACGAGTACGGTACCAACTTTGCTAACCTTGGGTTCTCAGG 10683 || || ||||| ||||| ||||||||||| || || ||||| |||||||| || Sbjct 1620 GGAACTTCCGGATATCATCAACGAGTACGGGCAGAATTTCAAGAACCTCGGGTTCTCTGG 1561 Query 10684 TGAGGAGGCGTTTAGCCTACTTGTAGCACAAGCGGAGAAGGGCAAGTGGGCGCTCGACAA 10743 ||||||||||| |||| || || | || || ||||||||||||||||| || || Sbjct 1560 CGAGGAGGCGTTCGGCCTGCTCGTGTCTGCCGCAGACAAGGGCAAGTGGGCGCTGGATAA 1501 Query 10744 GACCGGCGACGCGCTCAAGGAGTTTACTATCCGAGGCTCGGACATGTCCAAAACTTCCGT 10803 ||| ||||||||| | |||||||| || ||||| ||||| ||||||||| | || || Sbjct 1500 GACTGGCGACGCGTTGAAGGAGTTCACGATCCGTGGCTCTGACATGTCCGCCTCGTCGGT 1441 Query 10804 AGAAGCCTACGAAGCGCTTGGACTATCGGCCGAGGATATGTC 10845 || || ||||| | | || || || || ||||| ||||| Sbjct 1440 GGAGGCGTACGAGAAGATCGGCCTGTCTGCTGAGGAAATGTC 1399 Score = 91.5 bits (100), Expect = 4e-14 Identities = 241/363 (66%), Gaps = 4/363 (1%) Strand=Plus/Minus Query 11727 TCCTCGCCCCTAT-CTTGCTAGCGTGGAACGTCCTTAGTGCCGGTATTCAATGGGGA-TG 11784 |||||||||| | |||| | |||||||| |||| || || || || || | || Sbjct 598 TCCTCGCCCCGCTGCTTG-TCGCGTGGAATCTCCTGTCCGCAGGGAT-CAGTGCAGCGTG 541 Query 11785 GGAAAACCTCATTAAGCCCGCGTGGGACGCTATCGTATCCGCTGCGCAATGGATGTGGAA 11844 ||| ||||| || |||||||||||| || | | || ||| || || |||||||||| Sbjct 540 GGAGAACCTGATCAAGCCCGCGTGGAACAATCTGGTCACCGTCGCTCAGTGGATGTGGAC 481 Query 11845 TAACGTACTCAAACCTACGTTCGACTTTATCCGGTTGGCGTGGATGGTACTTGTCGAGGG 11904 | | | || | || | ||| || |||| ||| | ||| | || | || Sbjct 480 CACCATCCTGCAGCCGATCTTCTCCTACATCCAGTTCGGCTGGCAGAACCTCACCACGGC 421 Query 11905 CATGAAGTGGGGTTGGGAGAACCTACTCAAGCCCGCGTGGGACGCGCTGCAAACGGCTGC 11964 ||| ||| | ||| ||||| | || ||||||| ||||||||| || | || || Sbjct 420 CATCCAGTTCGCGTGGCAGAACATTCTGAAGCCCGTGTGGGACGCTGTGGCACTCGCCGC 361 Query 11965 TATGTGGCTATGGAATAGTGTTCTCATGCCTGTTTTTGGGTTCATAAAGGCCGGGTGGGA 12024 |||||| ||||| | | || |||||| || || | || || ||||||||| | Sbjct 360 ACAGTGGCTGTGGAACACGATCCTGTCGCCTGTGTTCGGCTGGATCAAAGCCGGGTGGCA 301 Query 12025 TACCCTACTTAACGGCATGAAGTGGGCATGGGAGAACATACTCAAGCCCACATGGGACGC 12084 |||| | ||||||| ||||| | || | || |||||||| | |||||||| Sbjct 300 GGCCCTCGGTGACGGCATCCGGTGGGTGTACGACACGATCATCAAGCCCGCGTGGGACGC 241 Query 12085 GGT 12087 ||| Sbjct 240 GGT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137313580061340