Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq6967 250 1e-61 SEQ46098 111 7e-20 SEQ40343 87.8 8e-13 SEQ24884 82.4 3e-11 >seq6967 Length=14028 Score = 250 bits (276), Expect = 1e-61 Identities = 586/872 (67%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 || ||| | ||||| | | || ||| |||| | ||| || || || ||||| ||||| Sbjct 13172 GGGTTGGCACGGTTCACCGTGTCCTCGTACATGATGTACGGGTACCCCGACTCGAACTGG 13231 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCA 60008 | ||| |||| |||||||| | | || || | || |||||| | ||||| | Sbjct 13232 ATCTCCGCGAGCGTCTGGAAGAAGTCACGGGCCTTCATCTTGGTCTTGGAGATCCGCGGA 13291 Query 60009 TCTTTTAGCCACGTGTCGTACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTAC 60068 || | | | | |||||| | |||||| ||| | |||| | | | | ||||| Sbjct 13292 TCCTCGACCATCTCGTCGTAGAGCTCGGTCACGCTCACGTCGGCGAACGGCCTGCCGTAG 13351 Query 60069 ACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGG 60128 || | | ||| || || ||| ||| ||| ||| | |||||| || | Sbjct 13352 ACGCGCTCCACGTCGTAGGGGCTGAACAGGTACATGTCGTCGTTGCGCTTGGCCAGCTCG 13411 Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 || |||| || || | || || || || || || ||||| || ||||||||||||||| Sbjct 13412 AAGGTGATGTCCGGGATGACCACACCCAGCGACAGGGTCTTGATGCGGATCTTCTCGTCG 13471 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 || || || |||||||| || |||||| |||||||| |||||||| |||| || || Sbjct 13472 GCATTCTCCCGCTTGGTGTCGAGGAACCGCAGGATGTCCGGGTGGTGGGCGTGCAGGTAC 13531 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 ||||| || || ||||||| ||||| || ||||| | || ||||| || || || Sbjct 13532 ACCGCGCCGGCACCCTGCCGGGCACCGAGCTGGTTGGCATACGAGAACGAGTCCTCCAGC 13591 Query 60309 ATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCTC 60366 | ||||||||| |||||||| || || | ||| ||||||| ||| ||||| || | Sbjct 13592 AGCTTCATCACCGGGATGACGCCGGACGACTG--GTTCTCGATGTGCTTGATCGGTGCAC 13649 Query 60367 CTGCCTCGCGGAGGTTG--GAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTG 60424 | ||||| |||| |||| || | | | | |||| |||||||| ||||| |||||||| Sbjct 13650 CGGCCTCACGGATGTTGCTCAGCAGC--AGGGCGACCCCGCCACCGCGCTTGGACAGCTG 13707 Query 60425 GAG---AGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGAT 60481 || |||| ||| ||| || ||||||||| ||||| |||||| | || | Sbjct 13708 CAGGGCGGAGT--TGATCGA-CCGGCCGATGGACTCCATGTTGTCCTCGATGCGCAGCAG 13764 Query 60482 GAAGCATGATACTGGCTTGCCTGCGTCGAGAAGCCCCG-CGTTGAGGAAGGTCGGAGTTG 60540 ||| || || || |||| || ||| | | ||| ||||||||| ||||| || | Sbjct 13765 GAAACACGACACGGGCTCACC-GCGCTGCGCCTTGCCGATGTTGAGGAACGTCGGGGTGG 13823 Query 60541 CAGGCTGGAAGATTCCCTTGATAATGAGATCCACAA---GGGACTCAGCGTGCTCGAAGT 60597 | |||||||| || ||| || || || | ||||| | | | |||| Sbjct 13824 CCGGCTGGAACCGGCCGCCGATGATCTCGTCGACCAGGCGGGACGCCACCTTCTCG---- 13879 Query 60598 CTTCGCTGTAGTGGATGGCCGTGAG-TACC------ACTCGATCTTCGTAGCGCTCGTAA 60650 || | || | | ||||| | | ||| || || || |||||||||||| Sbjct 13880 --TCCCCGTCG-GCCAGGCCGAGCGCCACCATGCAGACCCGGTCCTCGTAGCGCTCGAGG 13936 Query 60651 TAGCGCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATG 60710 ||||| || ||| ||||||| | ||||||| | ||| |||| | ||| || | | Sbjct 13937 TAGCGGCGTCCGTCGAAGGTCTTCAGCGTGTAGGAGGTGTAGTACTTGAACGCCCCGAGG 13996 Query 60711 TAGGTCTTGAAGCGGAACTTGTGTCCGTAGGC 60742 |||||||||| ||||||||||| ||||||| Sbjct 13997 AAGGTCTTGAACCGGAACTTGTGGGCGTAGGC 14028 >SEQ46098 Length=618 Score = 111 bits (122), Expect = 7e-20 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 || || || || || || || || ||||||||||||||||||||||| |||||||| || Sbjct 43 ACCCCCAGCGACAGCGTTTTGATGCGGATCTTCTCGTCGGCGTTTTCCCGCTTGGTGTCG 102 Query 60210 AG-GAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCT 60268 || ||||| ||||| || |||||||| ||||| | ||| ||||| || || ||||| | Sbjct 103 AGAAAACGC-AGGATATCCGGGTGGTGGGCGTTGAGATACACCGCGCCGGCCCCCTGGCG 161 Query 60269 TGCACCCAGTTGGTTAGAGTAGGAG 60293 || || | ||||| | ||||||| Sbjct 162 CGCGCCGCGCTGGTTGGCGTAGGAG 186 >SEQ40343 Length=524 Score = 87.8 bits (96), Expect = 8e-13 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 60625 CCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTCAAGGCGTAGG 60684 |||| || || ||| | ||||| ||||| || |||||| ||||||| ||||||| Sbjct 339 CCACACGGTCCTCGAAACGCTCCAGGTAGCGGTTCCCATCGAAGGTCTTCAGTGCGTAGG 280 Query 60685 AGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGTCCGTAGGCCT 60744 | | |||||||| | ||| || | | |||||| ||| ||||||||||| ||||||||| Sbjct 279 ACGTGTAGAACTTGAACGCGCCGAGGAAGGTCTGGAACCGGAACTTGTGGGCGTAGGCCT 220 Query 60745 G 60745 | Sbjct 219 G 219 >SEQ24884 Length=1939 Score = 82.4 bits (90), Expect = 3e-11 Identities = 225/341 (66%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 38892 AATGAGGCGATGATCGCTGCTGGATGCACTAACCTCCGGCGAGCTGCTATGTGGTGTGCT 38951 |||| |||||| |||| || || |||| | | ||| || || ||||| || Sbjct 1482 AATGCCGCGATGGTCGCCGCCGGGGTGACTACCGCGCTGCGGGCGGCGCACTGGTGCGCG 1423 Query 38952 CAGATCGGCCACGAGTCAGAAGGCCTCACCGCGATGGAAGAGTACGCCAGCGGAGCTGGC 39011 |||||||| |||||||| | || ||| ||||| || |||| ||| | | | Sbjct 1422 CAGATCGGTCACGAGTCGGCGGGACTCCGGTACATGGAGGAACTCGCCGACGGCTCGGCC 1363 Query 39012 TACGAAGGAAGGCTTGATCTAGGCAATACTCAGCCTGGAGACGGAGTGCGCTACAAGGGC 39071 ||||| || | || || ||||| || ||||| || || || | | | |||||| Sbjct 1362 TACGAGGGGCGCTCCGACCTCGGCAACACGCAGCCCGGTGATGGGCAGAGGTTCAAGGGG 1303 Query 39072 CGAGGCCCTATCCAGCTCACGGGTAGGTCCAACTATCGAGCCTTTACTACGTGGGC-TAG 39130 ||||| ||||||||||| || || | |||| || || || ||| |||||| || Sbjct 1302 TCCGGCCCGATCCAGCTCACCGGGCGGGCGAACTTCCGGGCGTTCACTCGGTGGGCGCAG 1243 Query 39131 AAGCAAGGGCTATACAACTA--TCGACTTTGAGGCGGAACCACACAAGGT---TTCCGAG 39185 |||| || || || | | | ||||| |||||| | || | ||| || || Sbjct 1242 CAGCAGGG---ATTCACCGACCTGGACTTCGAGGCGCAGCCGGAGCTGGTGCGCTCGGAT 1186 Query 39186 CCTAAGTGGGGATTCCTTGCAGCGTCCTTCTATTGGACGGT 39226 || |||||| ||||| || ||||||| || |||||||| Sbjct 1185 CCACGGTGGGGGTTCCTCGCCGCGTCCTGGTACTGGACGGT 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225601162378700