Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value SEQ10860 140 8e-28 seq4710 111 4e-19 >SEQ10860 Length=7223 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||||||||| || |||| || ||||| || ||||| ||||| || || || ||| Sbjct 1490 TCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAG 1549 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||||||| |||| || ||||||||||| ||||| || || ||||| || Sbjct 1550 ATCAAACGCTGTTG---ATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 1606 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| || ||| || || || ||||| ||||| || || || || || Sbjct 1607 TTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTA 1666 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 1667 ACGAAGATTTGCAT 1680 >seq4710 Length=78879 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || || || | || || || |||||| Sbjct 8640 TCCTTCTGGATGTTGTAGTCTGACAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAG 8699 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| |||||| |||||||| || || ||||| || || ||||| Sbjct 8700 ATGAGACGCTGCTGA---TCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTCACA 8756 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| | || || || || ||||| ||||| || ||||| ||||| Sbjct 8757 TTCTCAATGGTATCAGATGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTC 8816 Query 288460 ACGAATATCTGCATTATG 288477 ||||| || |||||| || Sbjct 8817 ACGAAGATTTGCATTTTG 8834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178957554184190