Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
SEQ10860 86.0 7e-12
seq2170 86.0 7e-12
SEQ16087 84.2 2e-11
SEQ34196 82.4 8e-11
SEQ22161 82.4 8e-11
seq1317 82.4 8e-11
>SEQ10860
Length=7223
Score = 86.0 bits (94), Expect = 7e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||||||| ||| ||||| ||||||||||| | ||||| ||| | || ||
Sbjct 1471 CACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTC 1530
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
| ||||| || || || || | ||||| || || | || | | || |||||| |
Sbjct 1531 CAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCC-T 1589
Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
|| | || | ||||| | | | || || || ||| || || | |||||||| |
Sbjct 1590 GAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCT 1649
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| ||||| || || || || |||||||||||
Sbjct 1650 TACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680
>seq2170
Length=10872
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 8995 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9054
Query 57067 TACTACCGAGGATTG 57081
||||| |||||||||
Sbjct 9055 TACTATCGAGGATTG 9069
>SEQ16087
Length=3448
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3058 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2999
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 2998 ATACTATCGAGGAT 2985
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3371 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3430
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 3431 ATACTATCGAGGAT 3444
>SEQ34196
Length=1104
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 619 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 560
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 559 TACTATCGAGGAT 547
>SEQ22161
Length=3272
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2799 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2740
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 2739 TACTATCGAGGAT 2727
>seq1317
Length=6343
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 3174 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3233
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 3234 TACTATCGAGGAT 3246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542899739673200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |