Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value SEQ13951 376 1e-99 SEQ22413 147 1e-30 SEQ32968 143 1e-29 >SEQ13951 Length=2429 Score = 376 bits (416), Expect = 1e-99 Identities = 570/805 (71%), Gaps = 7/805 (1%) Strand=Plus/Minus Query 65938 ACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTG 65997 ||| ||| ||||||||||| |||| ||| ||||||| || || |||||||||||||| | Sbjct 1957 ACGTCGCGCTCGGCATCGGCGGGTTCCCGCGGGGCCGTGTCGTCGAGATCTACGGTCCGG 1898 Query 65998 AGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTG 66057 |||| || || ||| | ||| || || ||||| || ||| | || ||||||| ||| | Sbjct 1897 AGTCCTCGGGTAAGACCACGGTGGCGCTGCACGCTGTCGCCGAGGCGCAGAAGGGCGGCG 1838 Query 66058 GCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCG 66117 ||| |||||||| ||||||||| || || | |||||||| |||||||| | |||| Sbjct 1837 GCATCGCCGCCTTCATCGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAACCTCG 1778 Query 66118 GGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGA 66177 ||||||| ||||| ||| | || ||||| ||||| ||||||||||| || |||| Sbjct 1777 GGGTGGACACGGACAACCTCCTCGTCTCCCAGCCGGACACCGGCGAGCAGGCACTCGAGA 1718 Query 66178 TCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGG 66237 ||| ||| | |||||| ||| |||| ||| ||||||||| |||||||| || |||| Sbjct 1717 TCGCCGACATGCTCGTCCGGTCGGGCGCGGTCGACATCATCGTGGTGGACTCGGTCGCGG 1658 Query 66238 CCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATG 66297 | ||| ||| ||||||| |||| ||||| || || ||| |||||||| ||||| | Sbjct 1657 CGCTGACCCCGAAGGCGGAGATCGAGGGGGAGATGGGCGACAGTCACGTCGGTCTGCAGG 1598 Query 66298 CCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGAT-TGCCAGCACCAACACG 66356 ||||||| ||| ||||| |||||||| ||||||| | | ||||| ||| ||| Sbjct 1597 CCCGCCTCATGAGCCAGGCACTGCGCAAGATGACCGGTGCACTCAGCCAG-ACCGGCACC 1539 Query 66357 CTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT 66416 | || | | | || ||||| |||||||||||||| |||| | ||| || Sbjct 1538 ACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGG---CGTGATGTTCGGTTCGCCG 1482 Query 66417 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 66476 |||||||| || || || ||||| ||| |||||||| ||||| || || |||| Sbjct 1481 GAGACCACGACGGGCGGCAAGGCACTGAAGTTCTACGCTTCGGTCCGCTGCGACATCCGG 1422 Query 66477 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 || || || ||||| || | || || ||||| ||||| || ||||| | Sbjct 1421 CGGGTCCAGACGCTCAAGGACGGGCAGGATGCGGTCGGTAACCGGACCAAGATGAAGATC 1362 Query 66537 GTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAG 66596 |||||||||||| | |||| ||| | || || || || ||||||| || Sbjct 1361 GTCAAGAACAAGGTCTCGCCGCCGTTCAAGATCGCCGAATTCGATGTCCTCTACGGACAG 1302 Query 66597 GGCATTTCCCGCG-AGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAA 66655 ||||| ||||| | ||| | | || ||||| ||| ||| | || || |||||||| Sbjct 1301 GGCATCTCCCGGGAAGGGTCGA-TCATCGACCTGGGCGTGGACAACGGACTGATCAAGAA 1243 Query 66656 GTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAAGACCGT 66715 ||| || |||||| || ||| || | | | | || ||||||||| ||| || Sbjct 1242 GTCCGGCTCCTGGTACACCTACAAGGGCGACCAGCTGGGGCAGGGCAAGGAGAAGGCCCG 1183 Query 66716 GCAGTGGCTGAAGGACAACCCGGAC 66740 ||| || ||||| ||||||||| Sbjct 1182 CGAGTTCCTCAAGGAGAACCCGGAC 1158 >SEQ22413 Length=7522 Score = 147 bits (162), Expect = 1e-30 Identities = 220/311 (71%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 59301 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59360 ||||||||| ||| || ||||||||| |||| | ||||| | || || ||| Sbjct 3674 TCGTCGGCAACCTCGTGGCGGACCCCGAGTTGCGCTACACCCCCAGCGGTGCCGCGGTCA 3615 Query 59361 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCG 59417 |||||||| || | |||| || ||| |||| | ||| |||| ||||||| Sbjct 3614 CCAACTTCCGGGTGGCTTCCACACCGCGACGCTTCGACTCACAGACCAACCAGTGGGTCG 3555 Query 59418 ACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCGG 59477 ||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| || Sbjct 3554 ACGACGAGGCCTTGTTCCTGACCTGCAACATCTGGCGCACCGCCGCCGAGAACGTCGCCA 3495 Query 59478 AAAGCCTCCAGAAAGGCCAGCGCGTCATCGT----GCATGGCTACCTCAAGCAGCGCTCC 59533 | ||||| || || ||| | || || ||||| | || | | |||| || ||| Sbjct 3494 ACAGCCTGCACAAGGGCGACCGGGTGATCGTCACCGGCCGGTTGCGTCAA----CGGTCC 3439 Query 59534 TTCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 59593 | ||||||| || || || ||||||||||| ||||||||||| |||||| ||||| Sbjct 3438 TACGAGACCCGCGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGACCGACGAGGTCGGC 3379 Query 59594 CCGTCGCTGCG 59604 || |||||||| Sbjct 3378 CCCTCGCTGCG 3368 >SEQ32968 Length=2597 Score = 143 bits (158), Expect = 1e-29 Identities = 235/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 59301 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59360 ||||||||| ||| || ||| || || ||| ||| | |||| ||| |||| Sbjct 2172 TCGTCGGCAACCTCGTTGCTGACGTTGACCTTAGGTACACGCCCAGTGGCGCGGCGGTCG 2113 Query 59361 CCAACTTCACCGTCGTGTCCAACGAACGCCGCCG---CGACGCCCAGGGCAAC---TGGG 59414 | |||||| ||||| ||| |||| | ||| || |||| | || ||| |||| Sbjct 2112 CGAACTTCCGCGTCGCGTC-AACG--CCCCGTCGGTTCGACTCGAAGTCGAACCAGTGGG 2056 Query 59415 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAG 59474 ||||||| || || |||||| |||||| | |||||||| | |||||||||||||| | Sbjct 2055 TCGACGGGGAGGCACTGTTCCTCAGCTGCAACGTCTGGCGCCAGGCCGCCGAGAACGTCG 1996 Query 59475 CGGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59534 || | ||| || || || | ||||| ||||| ||| || ||||| |||| Sbjct 1995 CGAACTCCCTGCACAAGGGGGACCGCGTGATCGTCTCCGGCCGGCTGCGCCAGCGGTCCT 1936 Query 59535 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59594 ||| ||| || || || ||||||||||| ||||||||||||| |||||| |||||| Sbjct 1935 ACGAAACCCGTGAGGGTGAGAAGCGCACCGTGTTCGAGGTGGAGGTCGACGAGGTCGGCC 1876 Query 59595 CGTCGCTGCGGTGGGCAACAGCTCGCGTGTCCAAG 59629 |||| || |||| || || || | || ||||| Sbjct 1875 CGTCTCTCCGGTACGCCACCGCACAGGTCGCCAAG 1841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242334154745660