Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq61 122 9e-23 >seq61 Length=55249 Score = 122 bits (134), Expect = 9e-23 Identities = 453/705 (64%), Gaps = 14/705 (2%) Strand=Plus/Plus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGG----CCGACTCCATCTCCGGAAT 93983 || |||||||| ||||||||||| | ||||| | |||| |||||| || || Sbjct 26384 CCCCAGATGTCATCGTGTTTCCTTTT----AACAATGGTTTCCGATTCCATCGAAGGCAT 26439 Query 93984 TTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAG 94043 |||| | | || || | ||||| | ||||| |||| ||| || || || ||| ||| Sbjct 26440 TTTCAAGTCCGTCGAGCAGTGTGCAATGATCTCCAAATCCGCTGGTGGCATTGGGCTCAA 26499 Query 94044 TGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGG 94103 ||| || | ||||||| ||| ||| ||| | || || |||||||| || || || Sbjct 26500 TGTGCATTGTATTCGTGCCAAGGGCACCTCGATCTGTGGCACTAATGGCACTTCAAATGG 26559 Query 94104 CCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGG 94163 | || || |||||| | || || || || | ||| || || || || || ||||| || Sbjct 26560 TTTGGTGCCCATGCTCAGAGTGTTTAATAATGTGGCTCGTTATGTCGATCAAGGTGGCGG 26619 Query 94164 GAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTT 94223 | | | || |||| || | || || || || ||||| | || | | || Sbjct 26620 CAAGCGACCAGGCGCTTTTGCCATTTACCTGGAACCTTGGCATTCCGATATCTTTGAGTT 26679 Query 94224 CATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGC 94283 | | ||||| ||||||| ||||| || | | || || | || ||||||||||| Sbjct 26680 CTTGGACCTCAAAAAGAACACGGGCAAGGAAGAGCACAGAGCTCGTGATCTCTTCTACGC 26739 Query 94284 TCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTT 94343 | ||| | || || || |||||||| || || ||| || | ||| || || Sbjct 26740 CTTGTGGATACCCGATCTGTTTATGAAGCGTGTGGAGGCCAATGAGGATTGGTCGCTGTT 26799 Query 94344 TTGTCCCAATGAATGTCCCGGACTGTCCGACGTTT--GTGGATCGCGTTTTGAAGACTTG 94401 ||||| | | |||||||| || ||||||| | |||| | ||||| | || Sbjct 26800 GTGTCCTCACAAGTGTCCCGGCTTGGAAGACGTTTGGGGGGATGAC--TTTGAGAAGCTG 26857 Query 94402 TATGCTCGTTACGA-ATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTG 94460 ||| | ||||| | || |||| || | || || | || | || || Sbjct 26858 TATACAAAGTACGAGAGCG-AGGGTCGCGCAAATCGTGTGATTAAAGCACAAACTCTTTG 26916 Query 94461 GGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC 94520 | || || || || || || ||||| || || || ||||| | ||||||||||| Sbjct 26917 GTATGCCATTGTTGAATCTCAAGTTGAGACTGGCACTCCGTACATGCTCTTCAAGGACTC 26976 Query 94521 TGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCAC 94580 | |||| ||| ||| |||||| | | || ||||| || || || ||||| Sbjct 26977 TTGCAACAGGAAGAGCAATCAGCAGAATGTTGGCACCATCAAATGCAGCAACCTCTGCAC 27036 Query 94581 CGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAA 94625 || ||||| || ||| | | || || |||||||| || || || Sbjct 27037 TGAAATTGTTGAATATTCGGCACCCGATGAGATTGCCGTCTGCAA 27081 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/141 (73%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 95071 ATCAAA---CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACG 95127 |||||| || || || | |||| |||||||||| || || ||||||||||| || || Sbjct 27509 ATCAAAGAGCATGGCGTTAGAAACTCGCTGCTTGTAGCTCCAATGCCCACGGCATCTACT 27568 Query 95128 GCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGG 95187 || |||||| | || || || ||||| || || || | || || ||| | |||| |||| Sbjct 27569 GCCCAGATCATGGGTAATAATGAGTCCTTTGAGCCGTATACTTCAAACATTTACACCAGG 27628 Query 95188 CGGGTGCTCGCCGGGGAATTC 95208 || || | |||| || ||| Sbjct 27629 CGCGTTTTGTCCGGAGAGTTC 27649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494438084835800