Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011269.1 Length=154017 Score E Sequences producing significant alignments: (Bits) Value SEQ29447 141 9e-29 SEQ32872 136 4e-27 SEQ26880 125 7e-24 >SEQ29447 Length=7397 Score = 141 bits (156), Expect = 9e-29 Identities = 114/137 (83%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 75995 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 76054 |||||||||| ||||||||| |||||||||||||||| |||||||||||| || || || Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 76055 GACCATGACTCGGTCGGCCTGTTCCAGCAGCGTCCGTCC---TGGGGCACGGTGGCCCAG 76111 |||||||| || |||| |||||||||||||||| | || |||||||| || || ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 76112 CGGATGAACCCGCGCGA 76128 || ||| | |||| ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ32872 Length=2637 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 112991 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113050 ||||||||||||||||||||||| ||| | |||||| |||||| || |||||| Sbjct 191 CGGCCCGGGCCGTGGCTCCGCCGCCGGCGCCCTGGTCGCCTACGCACTGACGATCACCAA 250 Query 113051 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGA 113110 |||||||| ||| || ||| |||||||||||||| ||| |||||||||| |||||| Sbjct 251 CATCGACCCCATCGAGCACGGGCTGATGTTCGAGCGATTCCTCAACCCGGAACGCCCCTC 310 Query 113111 CTTCCCCGACATCGACGTCGACTTC 113135 | |||||| |||||| |||||||| Sbjct 311 CGCCCCCGATATCGACATCGACTTC 335 >SEQ26880 Length=5820 Score = 125 bits (138), Expect = 7e-24 Identities = 236/347 (68%), Gaps = 24/347 (7%) Strand=Plus/Minus Query 141704 ATCAGCGAGAAGGGCATTGTCATCGCGCTCGCCGTCGCCCTGGTCGAGACCAACCTCAAG 141763 |||||||| |||||||| ||||| |||||| ||| ||||| ||| | | | ||| Sbjct 1571 ATCAGCGACCAGGGCATTAAAATCGCCCTCGCCACCGCACTGGTGGAGTCAGGCATGAAG 1512 Query 141764 ATGTACGCCAATCGGTCGGACCCGGAGAGCCTCAATTTCCCGCACGACGCGGTCGGCAGC 141823 ||||||||||| | | ||| || ||| | | || ||||| ||||| ||||||||| || Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 141824 GACGCCAACAGCGTCGGCGTCTTCCAGCAGCGCG---CTCCCTGGTGGGGCACGGTCGCC 141880 ||||| || |||||| | ||||||||||||| | | ||||||||| ||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAA 1392 Query 141881 GATCGCATGGACGTCGCGCGCAGCGCGGCGATGTTCTACAACAGCCTGTATCGCCAGCGC 141940 || ||||||||| | ||| ||| | ||||||||| || || | Sbjct 1391 GACCGCATGGACCCTGAGCGGTCCGCCGGAATGTTCTACGAC-----GT----------C 1347 Query 141941 GTCGGCGGCGCCGACTACAACACCGATCGGGTCTCTCCCGGCACCTGGGGCCAGATGGTC 142000 ||| || ||| ||||||||||||| | | | || ||| || | ||| || Sbjct 1346 CTCGACGACGCGGACTACAACACCG---GCGAC---CCGGGCGCCCACGCGCAGCGCGTG 1293 Query 142001 CAGCAGTCCGCCTTTCCGGATCGCTACGACAAACGCATGGCCGAGGC 142047 |||| ||| || ||||| || |||||| ||| |||| |||||| Sbjct 1292 CAGCGGTCAGCATTTCCCGACCGCTACAACACGAAGATGGGCGAGGC 1246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 75995 ATGTACGCCAACAATGCGGTGCCGGAGTCGCTGAACTTCCCGCACGACGCCATTGGCAGT 76054 |||||||||||| |||||||| ||||| |||||||||| ||||| || | ||| | Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 76055 GACCATGACTCGGTCGGCCTGTTCCAGCAGCG 76086 ||| |||||||||||||| ||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492442435616600