Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value SEQ45358 284 1e-71 SEQ37717 284 1e-71 SEQ44616 132 5e-26 SEQ26880 114 1e-20 SEQ29447 102 9e-17 SEQ41030 82.4 8e-11 >SEQ45358 Length=678 Score = 284 bits (314), Expect = 1e-71 Identities = 301/394 (76%), Gaps = 2/394 (1%) Strand=Plus/Minus Query 155934 CGCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGAC 155993 ||| |||||||||||| | | |||||||||||| |||||| ||| |||||||||| Sbjct 397 CGCGATCAACTGGAACACCATCCCGGACGAGAAGGACCTGGAGGTCTGGGACCGGCTGAC 338 Query 155994 CAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCA 156053 | |||||||||||||| |||||| | ||| ||||||| ||| || || ||| | Sbjct 337 CGGAAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCCAACGACATCAAGAGCTGGGGCAC 278 Query 156054 GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGA 156113 ||| ||||||| ||| | |||||||||||| |||||||| ||||| |||||||| Sbjct 277 GCTCACCGAGGCGGAGAAGACCACCACCATGCGGGTCTTCACCGGTCTGACCATGCTGGA 218 Query 156114 CACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGA 156173 ||||||||||||||||||||| ||| | |||||| ||| || |||| || ||||| Sbjct 217 CACCATCCAGGGCACCGTCGGTGCGACCAGCCTCATCGAGGATTCCGTCACGCCCCACGA 158 Query 156174 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGC-ACGCAGCTACTCGA 156232 ||||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||| Sbjct 157 GGAGGCGGTGTTCACCAACATCGCCTTCATGGAGTCCGTGCACGCGACGTC-CTACTCGT 99 Query 156233 ACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGG 156292 |||||| | |||| |||| || | | || ||||||| ||||||||||||||| Sbjct 98 CGATCTTCATGCCGCTCGCCTCCGCCCCGCCGCTCCACGCCGCCTTCCGCTGGTCGGAGT 39 Query 156293 AGAACGCCAACCTGCAGAAGAAGGCTGAGATCGT 156326 | | | |||||||| ||||| || || || Sbjct 38 CGTCCCAGACCCTGCAGAGCAAGGCCGATATAGT 5 >SEQ37717 Length=2411 Score = 284 bits (314), Expect = 1e-71 Identities = 329/441 (75%), Gaps = 26/441 (6%) Strand=Plus/Plus Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945 || |||||||| ||||||||||| || || || || |||||| || || || || || Sbjct 1348 ATGTTCGAGAGGTTCACCGACCGTGCGCGGCGTGTTGTCGTCCTGGCGCAGGAAGAGGCC 1407 Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005 ||| ||||||||| |||||||| |||||||| | |||||||| ||| |||||||| Sbjct 1408 CGCGCGCTCAACCACAACTACATCGGGACCGAGCACATCCTGCTCGGCCTGATCCACGAG 1467 Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065 || ||||||| || | || || ||| |||||||| || || Sbjct 1468 GGAGAGGGCGNNTCC---ATGG--------------GA-ATCTCCCTGGAGGCCGTCCGG 1509 Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCG---GGC-ACATCCC 153121 |||| | |||||| ||||||||| |||| | | ||||| ||| ||| ||||||| Sbjct 1510 ACCGAAGGCGAGGACATCATCGGC-ACGG---GTGGACACCCGCCGAACGGCTACATCCC 1565 Query 153122 GTTCACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGG 153181 |||||| ||| ||||| || |||||||| | ||||||||||| ||||||||||| Sbjct 1566 CTTCACCCCGCGCGCCAAGAAGGTGCTGGAGCTCGCCCTGCGCGAGGCCCTGCAGCTCGG 1625 Query 153182 CCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGT 153241 |||||| |||||||| |||||||| ||||||| | |||||||||||||||||||||||| Sbjct 1626 CCACAAGTACATCGGGACCGAGCACATCCTGCTCGGCCTGATCCGCGAGGGTGAGGGCGT 1685 Query 153242 GGGCTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCAT 153301 | ||||||||| || |||| |||||| || ||| || ||||| ||| |||||| Sbjct 1686 CGCAGCCCAGGTGCTCGTCAAGCTCGGCGCCGACCTGTCCCGCGTCCGGCAGCAGGTCAT 1745 Query 153302 CCAGCTGCTGTCCGGGTATGA 153322 ||||||||| || || || || Sbjct 1746 CCAGCTGCTCTCGGGTTACGA 1766 >SEQ44616 Length=1890 Score = 132 bits (146), Expect = 5e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 155941 AACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACCAACAAC 156000 ||||||||||| | | |||| |||||| ||||| ||| | ||||| |||| |||| Sbjct 225 AACTGGAACCGGATCACCGACCCCAAGGACCTCGAGGTCTGGCAGCGGCTCACCAGCAAC 166 Query 156001 TTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGT-CCAGTCGTGGCACCAGCTGAC 156059 |||||| |||||||||| | ||| ||||||||||| | || | | |||| || Sbjct 165 TTCTGGTTGCCGGAGAAAGTGCCGCTGTCCAATGACCTGCCCGAC-TGGCGGGCACTCGG 107 Query 156060 CGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGACACCAT 156119 ||| || || ||| |||||| ||||| |||||||| |||||| |||||||||| | Sbjct 106 CGACGAGGACCGCACCCTCACCACCCGGGTCTTCACCGGGCTGACGCTGCTGGACACGGT 47 Query 156120 CCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCC 156159 ||||| ||||||||| ||| || | ||||||| ||| Sbjct 46 CCAGGCCACCGTCGGAGCGCTCAGCCAGCTCCCGGATGCC 7 >SEQ26880 Length=5820 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 78191 ATGTACGCCAACACCGCCGTGCCCGAGTCGCTGAACTTCCCGCACGAGGCCGTCGGCCAC 78250 |||||||||||| | || ||||| ||||| |||||||||| ||||| || |||||| | Sbjct 1511 ATGTACGCCAACCCGGCGGTGCCTGAGTCCATGAACTTCCCCCACGATGCGGTCGGCGGC 1452 Query 78251 GACCACGACTCGGTGGGCCTGTTCCAGCAGCGCCAGA------CCTGGGGCACCATCGAC 78304 ||| |||||||| ||||| |||||||||||| | | | |||||||||||||| Sbjct 1451 GACGCGGACTCGGTCGGCCTTTTCCAGCAGCGCGACAATGGCGCGTGGGGCACCATCGAA 1392 Query 78305 CAGCGCATGAACCC-CCGCGAGTCGGCGGGCATGTTC 78340 | |||||| |||| ||| ||| || || |||||| Sbjct 1391 GACCGCATGGACCCTGAGCG-GTCCGCCGGAATGTTC 1356 >SEQ29447 Length=7397 Score = 102 bits (112), Expect = 9e-17 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 78191 ATGTACGCCAACACCGCCGTGCCCGAGTCGCTGAACTTCCCGCACGAGGCCGTCGGCCAC 78250 |||||||||| || || || || ||||||||||||| ||||||||| || |||| | Sbjct 5605 ATGTACGCCAGCAATGCGGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGC 5546 Query 78251 GACCACGACTCGGTGGGCCTGTTCCAGCAGCGCCAGACC---TGGGGCACCATCGACCAG 78307 ||||| || || | || |||||||||||||| ||| || ||||||||| ||| ||| Sbjct 5545 GACCATGATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAG 5486 Query 78308 CGCATGAACCCCCGCGA 78324 || ||| | || | ||| Sbjct 5485 CGTATGGATCCGCACGA 5469 >SEQ41030 Length=702 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 92611 CGTAGCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTC 92670 ||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||| ||||| Sbjct 140 CGTCGCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGTAGGTTC 199 Query 92671 AAATCCCACTCCCGCCAC 92688 ||||| | ||||| || Sbjct 200 GAATCCTGCCCCCGCTAC 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526294914759600