Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq61 300 2e-76 seq2872 98.7 1e-15 SEQ10860 87.8 2e-12 seq4983 82.4 8e-11 >seq61 Length=55249 Score = 300 bits (332), Expect = 2e-76 Identities = 961/1469 (65%), Gaps = 44/1469 (3%) Strand=Plus/Minus Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || |||||||| || ||||| || | || || || || | ||| || ||||| || Sbjct 27603 GGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCT 27544 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || | || || || | | ||| ||| || || | || | || ||||||| Sbjct 27543 ACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCC 27484 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || | |||||| || |||||| |||||||| | | ||| || | ||| Sbjct 27483 CAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGA 27424 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 | || || | || ||| ||||| ||| ||||| || || || ||||| || Sbjct 27423 CAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGG 27364 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || |||||||| ||||||||| ||| || | |||||| | | |||| || ||||| Sbjct 27363 GCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCA 27304 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 || || | |||| ||| | ||||||||||| | ||||| | || | ||| ||||| Sbjct 27303 TAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGA 27244 Query 153447 CGATG-CTTC---TCG-TTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 ||||| ||| | | || || |||||| || || ||||||| |||| ||| | Sbjct 27243 CGATGTCTTAAATTGGATTTCTTTGCCTCGGGCA-GC----GGATAGTAATTGATATCAA 27189 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | |||||||| | || | || |||||| | |||| ||||||| |||||| Sbjct 27188 TGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAATCGA 27129 Query 153562 AGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACG 153620 | || |||| || | | | ||| ||||| ||| || || |||| ||| |||||| Sbjct 27128 ATGT--TTTCTCTGAAGTCACAAACAT--ATTCAAGGCTATCGATGCCAAATTGCAGACG 27073 Query 153621 GCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTA 153678 || |||| |||| || || | || | || || || | |||||||||||||||||| | Sbjct 27072 GCAATCTCATCGG-GT-GCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTGCATTTGA 27015 Query 153679 TGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACG 153738 || ||| | ||| ||||||||||| || | ||||| | ||| |||||||||||||||| Sbjct 27014 TGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCATGTACG 26955 Query 153739 GTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAG---GTCCTGCGCTC 153792 | ||| ||||| ||||| | ||| || || | ||| | | || || || || Sbjct 26954 GAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAG-AGTTTGTGCTTTAATC 26896 Query 153793 GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 ||| ||| ||| |||||||||||||| ||||| |||||| || | Sbjct 26895 ACACGATTTGC-----GCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCAT 26841 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | || | ||| | | ||||||||||| || ||||||| ||||||||| || | Sbjct 26840 CCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCAT 26781 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 ||| | || || ||| |||||||| || | ||| | ||||| | ||| || || | Sbjct 26780 TGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAG 26721 Query 153973 CCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT-TGAGCACGCTATAGATGTCGGCG 154031 | || || ||| |||| |||| ||| || | || || | | |||| |||| Sbjct 26720 CTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTC-AAAGATATCGGAA 26662 Query 154032 TGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---CCCTGATCGACG 154088 ||||| ||||| | ||| | ||| | || ||| ||||| ||| || |||||||| Sbjct 26661 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACA 26602 Query 154089 TGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTG 154148 | || ||| ||| || || || | | |||||| ||| || ||| ||||| || Sbjct 26601 TAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTA 26542 Query 154149 GTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG 154208 || | |||| | |||| ||| || | |||||| || | |||||||| || Sbjct 26541 GTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTGAGCCCAATGCCACCA 26482 Query 154209 CCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCG 154268 || | || || || || || | | | | | || | ||||| |||||| |||| Sbjct 26481 GCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAATCG 26422 Query 154269 TCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAG 154328 | | | ||||||||| |||| || ||| || | || | ||| Sbjct 26421 GAAACCATTGTTAAAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAAT 26362 Query 154329 AGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGC 154387 | || || || ||||| ||| || || | | | || ||| || |||| || Sbjct 26361 AACGTTGGCGATGCATGCGTAAAATAGCGTTCCGAT-AACAGATTGTAAGTCTCGACAGC 26303 Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447 | ||||| || ||||| || || || | ||| || | ||| ||||||||||||||||| Sbjct 26302 GGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACG 26243 Query 154448 TTCGGCGACT---CTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACC 154504 |||||||| | | |||| ||||| | | ||| | |||||||| ||| | || Sbjct 26242 TTCGGCGATTTTGCCATTG---ATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCC 26186 Query 154505 GAAATACTTGTATTCAAAATCTAGCTCAT 154533 ||||| ||||| ||||||| | |||| Sbjct 26185 AAAATAGTTGTAGCCAAAATCACGATCAT 26157 >seq2872 Length=9359 Score = 98.7 bits (108), Expect = 1e-15 Identities = 271/407 (67%), Gaps = 9/407 (2%) Strand=Plus/Minus Query 52440 GGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTC 52499 || |||||||| ||||||| | | || | | || | ||||| || || || ||| Sbjct 3387 GGGAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACATTC 3328 Query 52500 AGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCG-TGCCTCTACTA 52558 |||||| ||||| || ||||| ||||| ||||| ||||||||| ||| | | | Sbjct 3327 TCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGGTGCTTATGTTC 3268 Query 52559 CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACG-ATCCTGAGCATGTTCAAGGAGG 52617 ||| | | ||| | | | | |||| ||| ||| | || | | ||| | Sbjct 3267 CAACATTTG-GTG-CAGCGGCCTAG---TCGGGAACGCATCATTGAAATCATAACGGATG 3213 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | ||| |||| || ||||||| | || | |||||||| ||| | || | ||||||| Sbjct 3212 CTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATTGGCATGA 3153 Query 52678 AC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 || | || | |||| ||| || ||||||||||| || ||||| || ||||| |||| Sbjct 3152 ACTGTGCTCTG-ATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTT 3094 Query 52737 GGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 || | ||| | |||| | ||||| || ||| ||| | | || || | Sbjct 3093 GGAGTGGGCAAGATTTACAACACAAAGAATCCATTCTCGTTCATGGAGATGATCTCTTTG 3034 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAGCG 52843 || ||||| |||||||| ||||||||| ||| || || ||| |||| Sbjct 3033 GATGGCAAAACCAACTTCTTCGAGAAGAAAGTGGGTGAATATCAGCG 2987 >SEQ10860 Length=7223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| || ||||| ||| | ||| ||| || || | ||| || |||| | Sbjct 1487 GACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCA 1546 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | ||||||||| || ||||| || ||||||||||| ||| | || | ||| | Sbjct 1547 AAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTC-CTGAATCTTGGCTTTGAC 1605 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | || || ||||| | || | || ||||| || || ||||| Sbjct 1606 ATTTTCAATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTT 1665 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1666 AACGAAGATTTGCAT 1680 >seq4983 Length=3163 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | |||||||||| || |||||||||||| Sbjct 643 GCCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 702 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || || | || || |||| |||| | |||||| || || || || Sbjct 703 GAGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 762 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | ||| || | | ||| || Sbjct 763 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAAC 822 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || |||||||| |||||||| Sbjct 823 CTCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495976397775600