Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq61 140 3e-28 seq4983 116 4e-21 SEQ10860 104 2e-17 seq2872 95.1 1e-14 seq4710 84.2 2e-11 >seq61 Length=55249 Score = 140 bits (154), Expect = 3e-28 Identities = 939/1486 (63%), Gaps = 83/1486 (6%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 || ||| ||||| || | || | || || || |||||||||||||| ||||| || || Sbjct 28006 GTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGT 27947 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCG---ACATGACCGAGTACGTGGG 145835 |||||| | || ||||| | | || || ||| | || || | ||| |||| Sbjct 27946 CTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGT---TGGG 27890 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895 |||||| || | || | ||||| ||||| ||||| |||| | | || || || || Sbjct 27889 TTCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGC 27830 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 ||| | || | |||| |||||||| ||||||| | |||||| || | Sbjct 27829 CATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTC 27770 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 ||| || || || ||||| || | || ||| ||| ||| |||| | Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGC-AATGATTTG-------A 27718 Query 146016 TTCTGGAGTGTAAATGTTC---AAGTCTACGAGGG------CCTTGATGAGATACTGGTT 146066 |||| | ||| | | | || |||| || || | | || || || Sbjct 27717 TTCTTCA-TGTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATT 27659 Query 146067 GACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTC 146126 ||||| | ||||| |||| | ||||||||| || | ||| || ||||||| Sbjct 27658 TACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTC 27599 Query 146127 GAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAG 146186 || ||||| || ||||| | ||||| || || | || || ||||| || || || Sbjct 27598 AAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAG 27539 Query 146187 CAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCA-- 146243 || |||||||| ||||| || ||||||| ||||| | ||| || || | | | Sbjct 27538 CAGCGAGTTTCTAACGCCATGCTCTTTGA---TTTTCA---ATTTTAGAGCAGTCCAATC 27485 Query 146244 -CAAATGATCCGTGGGATAGATATTGT---AGTTGTCGTAATGCATAGTGCCGCGGAACA 146299 |||| | | ||||| | |||| | | ||||| |||| | | || | || Sbjct 27484 CCAAAGGCTT-GTGGGTG---TCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCA 27429 Query 146300 GGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTT 146359 || | | |||| | |||||| |||||||| | | ||||| || || || || | Sbjct 27428 CCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCT 27369 Query 146360 CCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA-CGCTCCTGGCCTCCTCG 146418 | || || | |||| ||||| || |||| | |||| | | | ||| | || Sbjct 27368 CAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC-GGCTTTGTCA 27310 Query 146419 CTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478 || || ||||| | | | || | ||||||||||| | ||||| | || | ||| Sbjct 27309 CTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCA 27250 Query 146479 ACGGGGCGGTGTTTC---TTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTG 146535 | ||| || ||| | ||| | || || || |||| || ||||| ||| | Sbjct 27249 ATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGG--GCAGCGG-ATAGTAATTGATA 27193 Query 146536 TCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAG---CAGGACA 146592 || ||||| ||||| | ||| | |||| |||| || | ||||| | || | Sbjct 27192 TCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAA 27133 Query 146593 TAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTA 146652 | | |||||||| | | | || || || | || | ||| || || ||||| || Sbjct 27132 TCG---AATGTTTTC--TCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAAATTG 27079 Query 146653 CATACGGCAGTCTCGTCCT-TGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711 || |||||| |||| || || || |||| | ||||| || | ||||||||||||||| Sbjct 27078 CAGACGGCAATCTCATCGGGTGCCG-AATATTCAACAATTTCAGTGCAGAGGTTGCTGCA 27020 Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771 |||||| |||| | ||| | || || || | ||||||| | ||||||| ||||||| Sbjct 27019 TTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCAT 26960 Query 146772 GTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCT 146830 |||||| || || || || | | || || ||| | | |||| | || || Sbjct 26959 GTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGG--CATACCAAAGAGTTTGTGCT 26902 Query 146831 TTACTTGTCTTTCGTACAGTTT-----ATTCT---TTTCGTATTTCTCGTACAATATTTC 146882 ||| | | || ||| | || | ||||| || |||| | || Sbjct 26901 TTAAT-------CACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTC 26849 Query 146883 AAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCA 146942 ||| | || | |||| | ||||||| |||| | ||||| ||||||||||| Sbjct 26848 AAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCA 26789 Query 146943 TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCA-AAGGCCCAGCATCA 147001 || | ||| ||| ||| || | |||||||| |||||| ||||| ||||| || | | Sbjct 26788 ATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAG-AAGA 26730 Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061 || ||||| || || || |||| |||| | | | || | || || | | Sbjct 26729 GATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGA 26670 Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCG---CCCT 147118 | || | ||||||||| |||| ||| ||| | |||||| |||||| ||| || | Sbjct 26669 TATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTT 26610 Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACAC 147164 ||||||| | || ||| ||||| || |||| | ||||| ||| Sbjct 26609 GATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCAC 26564 >seq4983 Length=3163 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| ||| Sbjct 644 CCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 703 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| ||||| ||| ||||||| ||||||||||| || || Sbjct 704 AGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 763 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||| || | ||| || Sbjct 764 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACC 823 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || |||||||| |||||||| Sbjct 824 TCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870 >SEQ10860 Length=7223 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | |||||| || | |||||||||||||| |||||||||||| Sbjct 1451 GCACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCG 1510 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||||| ||| || | || || || || ||||||| ||||| ||||| ||| Sbjct 1511 GAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGA 1570 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | || |||| | ||| | ||| |||| || Sbjct 1571 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTC 1629 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || | || || || || || ||||| || || || ||||| Sbjct 1630 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680 >seq2872 Length=9359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA-ATCTTTAGTGGGAATGAACGCGGA 47425 |||||| |||||| || |||| || ||||||| | ||| | ||| | ||||| | Sbjct 3204 ATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATTGGCA-TGAACTGTGC 3146 Query 47426 GATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAA-AGTATC 47484 ||||| | || ||||| |||||||| || ||||| | ||| |||| ||| Sbjct 3145 TCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGAGTGGG 3086 Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544 | ||||||||| |||| ||||||||||| ||| ||| | | || || | || |||| Sbjct 3085 C-AAGATTTACAACACAAAGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCA 3027 Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 | |||||||| ||||||||| || || |||||| Sbjct 3026 AAACCAACTTCTTCGAGAAGAAAGTGGGTGAATAT 2992 >seq4710 Length=78879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCG-TAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||| || | |||| |||||| || | | | ||||| || || || ||||| || Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || ||||| || |||||| |||| | ||||||||||| || || Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| || ||| | | || | ||| || | ||| || Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || ||||| || || || || || ||||| Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475226762945200