Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq61 140 3e-28
seq4983 116 4e-21
SEQ10860 104 2e-17
seq2872 95.1 1e-14
seq4710 84.2 2e-11
>seq61
Length=55249
Score = 140 bits (154), Expect = 3e-28
Identities = 939/1486 (63%), Gaps = 83/1486 (6%)
Strand=Plus/Minus
Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778
|| ||| ||||| || | || | || || || |||||||||||||| ||||| || ||
Sbjct 28006 GTTGACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGT 27947
Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCG---ACATGACCGAGTACGTGGG 145835
|||||| | || ||||| | | || || ||| | || || | ||| ||||
Sbjct 27946 CTTGAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTAACTTGCCGTAGT---TGGG 27890
Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGC 145895
|||||| || | || | ||||| ||||| ||||| |||| | | || || || ||
Sbjct 27889 TTCGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGC 27830
Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955
||| | || | |||| |||||||| ||||||| | |||||| || |
Sbjct 27829 CATCTTGATGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTC 27770
Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015
||| || || || ||||| || | || ||| ||| ||| |||| |
Sbjct 27769 CTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGC-AATGATTTG-------A 27718
Query 146016 TTCTGGAGTGTAAATGTTC---AAGTCTACGAGGG------CCTTGATGAGATACTGGTT 146066
|||| | ||| | | | || |||| || || | | || || ||
Sbjct 27717 TTCTTCA-TGTCATCATCCCATAAATCTAGTTCGGTTAAATCCCGCAACAAATGATGATT 27659
Query 146067 GACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTC 146126
||||| | ||||| |||| | ||||||||| || | ||| || |||||||
Sbjct 27658 TACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTC 27599
Query 146127 GAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAG 146186
|| ||||| || ||||| | ||||| || || | || || ||||| || || ||
Sbjct 27598 AAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCTACAAG 27539
Query 146187 CAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCA-- 146243
|| |||||||| ||||| || ||||||| ||||| | ||| || || | | |
Sbjct 27538 CAGCGAGTTTCTAACGCCATGCTCTTTGA---TTTTCA---ATTTTAGAGCAGTCCAATC 27485
Query 146244 -CAAATGATCCGTGGGATAGATATTGT---AGTTGTCGTAATGCATAGTGCCGCGGAACA 146299
|||| | | ||||| | |||| | | ||||| |||| | | || | ||
Sbjct 27484 CCAAAGGCTT-GTGGGTG---TCTTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCA 27429
Query 146300 GGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTT 146359
|| | | |||| | |||||| |||||||| | | ||||| || || || || |
Sbjct 27428 CCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCT 27369
Query 146360 CCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA-CGCTCCTGGCCTCCTCG 146418
| || || | |||| ||||| || |||| | |||| | | | ||| | ||
Sbjct 27368 CAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC-GGCTTTGTCA 27310
Query 146419 CTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478
|| || ||||| | | | || | ||||||||||| | ||||| | || | |||
Sbjct 27309 CTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCA 27250
Query 146479 ACGGGGCGGTGTTTC---TTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTG 146535
| ||| || ||| | ||| | || || || |||| || ||||| ||| |
Sbjct 27249 ATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGG--GCAGCGG-ATAGTAATTGATA 27193
Query 146536 TCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAG---CAGGACA 146592
|| ||||| ||||| | ||| | |||| |||| || | ||||| | || |
Sbjct 27192 TCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGTTTCTTGAAA 27133
Query 146593 TAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTA 146652
| | |||||||| | | | || || || | || | ||| || || ||||| ||
Sbjct 27132 TCG---AATGTTTTC--TCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAAATTG 27079
Query 146653 CATACGGCAGTCTCGTCCT-TGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711
|| |||||| |||| || || || |||| | ||||| || | |||||||||||||||
Sbjct 27078 CAGACGGCAATCTCATCGGGTGCCG-AATATTCAACAATTTCAGTGCAGAGGTTGCTGCA 27020
Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771
|||||| |||| | ||| | || || || | ||||||| | ||||||| |||||||
Sbjct 27019 TTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGCAT 26960
Query 146772 GTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCT 146830
|||||| || || || || | | || || ||| | | |||| | || ||
Sbjct 26959 GTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGG--CATACCAAAGAGTTTGTGCT 26902
Query 146831 TTACTTGTCTTTCGTACAGTTT-----ATTCT---TTTCGTATTTCTCGTACAATATTTC 146882
||| | | || ||| | || | ||||| || |||| | ||
Sbjct 26901 TTAAT-------CACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTC 26849
Query 146883 AAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCA 146942
||| | || | |||| | ||||||| |||| | ||||| |||||||||||
Sbjct 26848 AAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCA 26789
Query 146943 TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCA-AAGGCCCAGCATCA 147001
|| | ||| ||| ||| || | |||||||| |||||| ||||| ||||| || | |
Sbjct 26788 ATCCTCATTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAG-AAGA 26730
Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061
|| ||||| || || || |||| |||| | | | || | || || | |
Sbjct 26729 GATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGA 26670
Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCG---CCCT 147118
| || | ||||||||| |||| ||| ||| | |||||| |||||| ||| || |
Sbjct 26669 TATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTT 26610
Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACAC 147164
||||||| | || ||| ||||| || |||| | ||||| |||
Sbjct 26609 GATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCAC 26564
>seq4983
Length=3163
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| || || || ||||| |||
Sbjct 644 CCACCACGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 703
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||| ||||| ||| ||||||| ||||||||||| || ||
Sbjct 704 AGGGTACGACCATCTTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 763
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||||| | |||| ||| || | ||| ||
Sbjct 764 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACC 823
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||| |||| || |||||||| ||||||||
Sbjct 824 TCCAAGGTAATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCAT 870
>SEQ10860
Length=7223
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| |||||||| | || | |||||| || | |||||||||||||| ||||||||||||
Sbjct 1451 GCACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCG 1510
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| ||||| ||| || | || || || || ||||||| ||||| ||||| |||
Sbjct 1511 GAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGA 1570
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062
|| || || || |||||| ||| | | || |||| | ||| | ||| |||| ||
Sbjct 1571 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTC 1629
Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || | || | || || || || || ||||| || || || |||||
Sbjct 1630 GACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 1680
>seq2872
Length=9359
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA-ATCTTTAGTGGGAATGAACGCGGA 47425
|||||| |||||| || |||| || ||||||| | ||| | ||| | ||||| |
Sbjct 3204 ATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCGTCAACTTGATTGGCA-TGAACTGTGC 3146
Query 47426 GATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAA-AGTATC 47484
||||| | || ||||| |||||||| || ||||| | ||| |||| |||
Sbjct 3145 TCTGATGTCCGAATATATCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGAGTGGG 3086
Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544
| ||||||||| |||| ||||||||||| ||| ||| | | || || | || ||||
Sbjct 3085 C-AAGATTTACAACACAAAGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCA 3027
Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579
| |||||||| ||||||||| || || ||||||
Sbjct 3026 AAACCAACTTCTTCGAGAAGAAAGTGGGTGAATAT 2992
>seq4710
Length=78879
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCG-TAGACTCTTTTTGAATATTGTAATCGCC 126945
||||| || | |||| |||||| || | | | ||||| || || || ||||| ||
Sbjct 8603 CCACCACGCAGACGCAGCACCAAGTGCAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGA 8662
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| |||||| ||| || ||||| || |||||| |||| | ||||||||||| || ||
Sbjct 8663 CAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGG 8722
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || |||||||| ||| || ||| | | || | ||| || | ||| ||
Sbjct 8723 GATTCCTTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCCAC 8782
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || || ||||| || || || || || |||||
Sbjct 8783 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATTTGCAT 8830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475226762945200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |