Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4710 131 4e-25 SEQ10860 123 6e-23 seq4983 111 4e-19 SEQ24830 96.9 8e-15 SEQ29734 89.7 1e-12 >seq4710 Length=78879 Score = 131 bits (144), Expect = 4e-25 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 || ||||||||||| |||| ||||||||| | || ||| | ||||| ||||||||||| Sbjct 8631 AGGGTCGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGACCATCCTCCAGCTGCTTG 8690 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||||||||||||||| || || |||||||| || || ||||| | Sbjct 8691 CCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCC 8750 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| || | ||| || | || || || |||| ||||| ||||| || || || Sbjct 8751 TTCACATTCTCAATGGTATCAGATGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGG 8810 Query 199610 GTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| || ||||| |||||| Sbjct 8811 GTCTTCACGAAGATTTG---CATTTT 8833 >SEQ10860 Length=7223 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || ||||| ||||||| ||||| || | | ||| Sbjct 1460 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 1519 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| ||||| ||||| | |||||| || || ||| ||||||| Sbjct 1520 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 1579 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||| | ||| || | | ||| || || | Sbjct 1580 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGA 1639 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| || || ||||| Sbjct 1640 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 1677 >seq4983 Length=3163 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | |||||| Sbjct 659 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCT 718 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||||||||| | ||||||||| || || ||| || || ||| Sbjct 719 TCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 778 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || ||||| || || ||| Sbjct 779 TGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTAATGGTC 838 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 839 TTGCCAGTCAATGTCTTTACAAAGATCTG 867 >SEQ24830 Length=1296 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||| || ||||||||||| |||| || ||||| | |||||| Sbjct 1263 CGGAGTCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTATAGTCTGACAAAGTT 1204 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 | ||||| ||||||||||| || ||||||||||||||||| Sbjct 1203 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTG 1163 >SEQ29734 Length=4748 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| ||||| |||||||| |||| ||| ||||| | |||||| Sbjct 355 CGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTA 296 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGC 199507 | ||||| ||||| ||||| || ||||||||||||||| Sbjct 295 CGACCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACGC 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178225187064035