Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4710 131 4e-25
SEQ10860 123 6e-23
seq4983 111 4e-19
SEQ24830 96.9 8e-15
SEQ29734 89.7 1e-12
>seq4710
Length=78879
Score = 131 bits (144), Expect = 4e-25
Identities = 153/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489
|| ||||||||||| |||| ||||||||| | || ||| | ||||| |||||||||||
Sbjct 8631 AGGGTCGACTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGACCATCCTCCAGCTGCTTG 8690
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|| |||||||||||||||||||| || || |||||||| || || ||||| |
Sbjct 8691 CCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATCTTAGCC 8750
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
||||| || | ||| || | || || || |||| ||||| ||||| || || ||
Sbjct 8751 TTCACATTCTCAATGGTATCAGATGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGG 8810
Query 199610 GTTTTCACAAAAATTTGGTACATTTT 199635
|| ||||| || ||||| ||||||
Sbjct 8811 GTCTTCACGAAGATTTG---CATTTT 8833
>SEQ10860
Length=7223
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||| | || ||||| ||||||| ||||| || | | |||
Sbjct 1460 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 1519
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||| ||||| ||||| | |||||| || || ||| |||||||
Sbjct 1520 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 1579
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||||||||| || || ||| | ||| || | | ||| || || |
Sbjct 1580 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATGGTATCCGACGGTTCGACCTCAAGA 1639
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||||||||| ||||| || || |||||
Sbjct 1640 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTG 1677
>seq4983
Length=3163
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| ||||||||| | | || | ||||||
Sbjct 659 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCT 718
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||||||||||||||| | ||||||||| || || ||| || || |||
Sbjct 719 TCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 778
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||| || | | || || ||||| || || |||
Sbjct 779 TGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCAACCTCCAAGGTAATGGTC 838
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || ||||| || ||
Sbjct 839 TTGCCAGTCAATGTCTTTACAAAGATCTG 867
>SEQ24830
Length=1296
Score = 96.9 bits (106), Expect = 8e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| |||| ||||| | ||| || ||||||||||| |||| || ||||| | ||||||
Sbjct 1263 CGGAGTCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATATTATAGTCTGACAAAGTT 1204
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509
| ||||| ||||||||||| || |||||||||||||||||
Sbjct 1203 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTG 1163
>SEQ29734
Length=4748
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | || ||| | ||| ||||| |||||||| |||| ||| ||||| | ||||||
Sbjct 355 CGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGACAAAGTA 296
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGC 199507
| ||||| ||||| ||||| || |||||||||||||||
Sbjct 295 CGACCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACGC 257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178225187064035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |