Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 322 5e-83
seq4710 129 6e-25
seq4983 116 4e-21
seq4005 93.3 4e-14
>seq2872
Length=9359
Score = 322 bits (356), Expect = 5e-83
Identities = 573/827 (69%), Gaps = 12/827 (1%)
Strand=Plus/Plus
Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666
|||||||| ||||| || ||||| || || || ||||| || ||||| || || | | |
Sbjct 2990 TGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCC 3049
Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC--AGGTCGACGAGCA 132724
|| || || || || ||||||||| |||| || || || || || | |
Sbjct 3050 ATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGC--CCACTCCAAGCTCAACCAATA 3107
Query 132725 GCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGAC 132784
| | || || || |||||||| |||| ||||| | || || | || | ||
Sbjct 3108 GGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGT 3167
Query 132785 GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844
|| |||||||| |||||||| || ||||| || | || || || || | |||||
Sbjct 3168 TGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTT 3227
Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA-GCAAAG 132903
| | | ||| || || ||||| ||||||||||| | |||||| ||||| ||||||
Sbjct 3228 CAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCAAAG 3286
Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963
|| ||||||| || || || | || || | ||||||| ||| || | || |||||
Sbjct 3287 TCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATA 3346
Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023
|| || || || || ||||| || |||| || || || || ||||||| ||| ||
Sbjct 3347 AGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCA 3406
Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083
|| || || ||||| | | || || || || |||| | || | ||||||
Sbjct 3407 ACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAAGAA 3466
Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143
|| ||||| || ||||| || || |||||||||||| ||||| || || | |
Sbjct 3467 AGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGAT-- 3524
Query 133144 AGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201
||| || || ||||| | | | |||||||| ||||| |||||||| || |
Sbjct 3525 AGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAAT 3584
Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261
| || ||||||||||| || || ||||| |||||||| || |||||| |||||||||||
Sbjct 3585 GCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTT 3644
Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321
|||| ||||| ||||||||||||||||| || || || || || || || ||||
Sbjct 3645 CTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGG 3704
Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTG 133380
||| ||| ||| |||||||| ||||| || || | |||| |||| || | ||
Sbjct 3705 CCAACACATGCGATATGAAATGACGCTCATTATCCGT-AAGCTTGGCCCAATCAGTCATG 3763
Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
||||||||||| ||||| || ||||||||||| ||||| || || ||
Sbjct 3764 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 3810
>seq4710
Length=78879
Score = 129 bits (142), Expect = 6e-25
Identities = 168/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || || || || ||||||||| | || || ||| |
Sbjct 8833 AAAATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCA 8774
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | | | | | || | || |||| ||||| || ||||| ||| | ||
Sbjct 8773 TCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGAT 8714
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | ||| ||||| |||||||| || | ||||| || ||||||
Sbjct 8713 CAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTAC 8654
Query 38421 AACATCCAAAAGGAAGCGACGC-TGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| ||||| |||| | |||| |||||||||||| || | || ||
Sbjct 8653 AACATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8603
>seq4983
Length=3163
Score = 116 bits (128), Expect = 4e-21
Identities = 167/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| || || ||||| || | || ||||| ||||| ||| | || || ||| |
Sbjct 874 AAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCC 815
Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358
| | || | | | | |||| | || | || |||| ||||| ||||| |||||| | |
Sbjct 814 CTCTGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAG 756
Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418
| || ||||| | || | ||| || || ||| |||| || | || |||||| |||||
Sbjct 755 ATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACT 696
Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||||| ||||| | || || || |||||||| ||| || | || |||
Sbjct 695 ACAACATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGC 643
>seq4005
Length=24450
Score = 93.3 bits (102), Expect = 4e-14
Identities = 215/322 (67%), Gaps = 9/322 (3%)
Strand=Plus/Minus
Query 107500 CGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGGCCCAGATCGTCCCTGT 107559
|||| | ||||| || |||||||||||| ||| | ||| ||||| || |
Sbjct 15525 CGCCAGCATTGCCAGTTGTCTTGCTCAACTCGTGGCCACCCTTGCCAAGATCATCGGCAT 15466
Query 107560 CCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCCGTACAAAGTCACGACGC 107619
||| || || || | | | ||||| |||||||||| | ||| | | ||| | ||
Sbjct 15465 CCGCATGGACCACAACAGTGCGTCCAATGATGCTGTTCTCGCCAAAGAGAGTTATCTGGC 15406
Query 107620 CGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCCCAGGT 107679
||| || | ||| | ||| | |||||| || |||| ||| |||||||| |
Sbjct 15405 TGTCGGTGATATCGACCGCAGTGGGACCGTCGCCGCTGGCCG---TGATGTTGCCCAAAT 15349
Query 107680 CGCCGACGTGCCTGATCTCGGCGTC---GGGCGCGCCGTGGTCGCGCTTCGTCGGGTTGA 107736
|||| | ||| | ||| |||| ||| || ||||| || ||| ||||||||
Sbjct 15348 CGCCCAAGTGGCG---CTCACCGTCTGTGGGTGCACCGTGCTCCTTCTTGTGCGGGTTGA 15292
Query 107737 AATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAAGC 107796
|||| || | ||| |||| |||||| | |||||| ||||| ||||||||||| |
Sbjct 15291 AATGGGGTCCTGATGACATGCATCCGTTGGTGTTGTCGCCAAACTCATGCACGTGGAATC 15232
Query 107797 CGTGCAGGCCGCGCGGCAGGCC 107818
| ||||| || ||| ||| ||
Sbjct 15231 CATGCAGACCTTGCGCCAGACC 15210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499884544163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |