Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2872 322 5e-83 seq4710 129 6e-25 seq4983 116 4e-21 seq4005 93.3 4e-14 >seq2872 Length=9359 Score = 322 bits (356), Expect = 5e-83 Identities = 573/827 (69%), Gaps = 12/827 (1%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 |||||||| ||||| || ||||| || || || ||||| || ||||| || || | | | Sbjct 2990 TGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAAGAGATCATCTCC 3049 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC--AGGTCGACGAGCA 132724 || || || || || ||||||||| |||| || || || || || | | Sbjct 3050 ATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGC--CCACTCCAAGCTCAACCAATA 3107 Query 132725 GCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGAC 132784 | | || || || |||||||| |||| ||||| | || || | || | || Sbjct 3108 GGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCATGCCAATCAAGT 3167 Query 132785 GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844 || |||||||| |||||||| || ||||| || | || || || || | ||||| Sbjct 3168 TGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATCCGTTATGATTT 3227 Query 132845 CCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA-GCAAAG 132903 | | | ||| || || ||||| ||||||||||| | |||||| ||||| |||||| Sbjct 3228 CAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT-AAGCACCGCAAAG 3286 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 || ||||||| || || || | || || | ||||||| ||| || | || ||||| Sbjct 3287 TCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAGTCCAGGCATA 3346 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 || || || || || ||||| || |||| || || || || ||||||| ||| || Sbjct 3347 AGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAAGATGCCTTCA 3406 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 || || || ||||| | | || || || || |||| | || | |||||| Sbjct 3407 ACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCGAAGAGATCCAAGAA 3466 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 || ||||| || ||||| || || |||||||||||| ||||| || || | | Sbjct 3467 AGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCATTGAAGAGAT-- 3524 Query 133144 AGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 ||| || || ||||| | | | |||||||| ||||| |||||||| || | Sbjct 3525 AGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGTACATTTCGGAAT 3584 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | || ||||||||||| || || ||||| |||||||| || |||||| ||||||||||| Sbjct 3585 GCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGGTCACCTGCACTT 3644 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 |||| ||||| ||||||||||||||||| || || || || || || || |||| Sbjct 3645 CTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAGCAGCAAAGAAGG 3704 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTG 133380 ||| ||| ||| |||||||| ||||| || || | |||| |||| || | || Sbjct 3705 CCAACACATGCGATATGAAATGACGCTCATTATCCGT-AAGCTTGGCCCAATCAGTCATG 3763 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||||||| ||||| || ||||||||||| ||||| || || || Sbjct 3764 TCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 3810 >seq4710 Length=78879 Score = 129 bits (142), Expect = 6e-25 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || || || ||||||||| | || || ||| | Sbjct 8833 AAAATGCAAATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCA 8774 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| || ||||| ||| | || Sbjct 8773 TCTGATACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCAGAT 8714 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| ||||| |||||||| || | ||||| || |||||| Sbjct 8713 CAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTGTCAGACTAC 8654 Query 38421 AACATCCAAAAGGAAGCGACGC-TGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| | |||| |||||||||||| || | || || Sbjct 8653 AACATCCAGAAGGAGTCGACCCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8603 >seq4983 Length=3163 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || ||||| || | || ||||| ||||| ||| | || || ||| | Sbjct 874 AAATATGCAGATCTTTGTAAAGACATTGACTGGCAAGACCATTACCTTGGAGGTTGAGCC 815 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | || | | | | |||| | || | || |||| ||||| ||||| |||||| | | Sbjct 814 CTCTGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAG 756 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||||| | || | ||| || || ||| |||| || | || |||||| ||||| Sbjct 755 ATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGTACCCTCTCCGACT 696 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || |||||||| ||| || | || ||| Sbjct 695 ACAACATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGC 643 >seq4005 Length=24450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 215/322 (67%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 107500 CGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGGCCCAGATCGTCCCTGT 107559 |||| | ||||| || |||||||||||| ||| | ||| ||||| || | Sbjct 15525 CGCCAGCATTGCCAGTTGTCTTGCTCAACTCGTGGCCACCCTTGCCAAGATCATCGGCAT 15466 Query 107560 CCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCCGTACAAAGTCACGACGC 107619 ||| || || || | | | ||||| |||||||||| | ||| | | ||| | || Sbjct 15465 CCGCATGGACCACAACAGTGCGTCCAATGATGCTGTTCTCGCCAAAGAGAGTTATCTGGC 15406 Query 107620 CGTCCGTCAAGCTCACCTCGGTGAGCGCGTCGCGGCCCGCCGACTTGAGGTTGCCCAGGT 107679 ||| || | ||| | ||| | |||||| || |||| ||| |||||||| | Sbjct 15405 TGTCGGTGATATCGACCGCAGTGGGACCGTCGCCGCTGGCCG---TGATGTTGCCCAAAT 15349 Query 107680 CGCCGACGTGCCTGATCTCGGCGTC---GGGCGCGCCGTGGTCGCGCTTCGTCGGGTTGA 107736 |||| | ||| | ||| |||| ||| || ||||| || ||| |||||||| Sbjct 15348 CGCCCAAGTGGCG---CTCACCGTCTGTGGGTGCACCGTGCTCCTTCTTGTGCGGGTTGA 15292 Query 107737 AATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGCACGTGGAAGC 107796 |||| || | ||| |||| |||||| | |||||| ||||| ||||||||||| | Sbjct 15291 AATGGGGTCCTGATGACATGCATCCGTTGGTGTTGTCGCCAAACTCATGCACGTGGAATC 15232 Query 107797 CGTGCAGGCCGCGCGGCAGGCC 107818 | ||||| || ||| ||| || Sbjct 15231 CATGCAGACCTTGCGCCAGACC 15210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499884544163200