Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value SEQ24884 100 1e-16 SEQ25496 82.4 3e-11 >SEQ24884 Length=1939 Score = 100 bits (110), Expect = 1e-16 Identities = 128/177 (72%), Gaps = 12/177 (7%) Strand=Plus/Minus Query 25493 TGGGGCGCGCAGGTTGGGCACGAGTCGGTGGGCCTCAAATTCATGAGCGAGCTGTGGGGG 25552 ||| |||||||| | || |||||||||| ||| ||| | |||| || || | Sbjct 1431 TGGTGCGCGCAGATCGGTCACGAGTCGGCGGGACTCCGGTACATGGAGGAACTC-----G 1377 Query 25553 CCGACGGCCGCACAGCAGGGCTATGAGGGCCGCGCAGACCTCGGCAACACGCAGCCCGGC 25612 |||||||| || ||| ||||| ||| | ||||||||||||||||||||||| Sbjct 1376 CCGACGGCTC-------GGCCTACGAGGGGCGCTCCGACCTCGGCAACACGCAGCCCGGT 1324 Query 25613 GACGGGTACAGGTTCCGCGGCGCCGGGCCGATCCAGGTCACCGGACGGCACAACTTC 25669 || ||| | |||||| || |||| ||||||||| ||||||| ||| |||||| Sbjct 1323 GATGGGCAGAGGTTCAAGGGGTCCGGCCCGATCCAGCTCACCGGGCGGGCGAACTTC 1267 >SEQ25496 Length=2929 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1000 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGTTCGAGTCGTGCC 1059 || ||||||||||||||||||||||||||||| |||| ||||||| |||| |||| || | Sbjct 404 GTGGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTC 463 Query 1060 GCGCCCGC 1067 || || || Sbjct 464 GCCCCTGC 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190487651475600