Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq133 105 5e-17 seq2972 98.7 8e-15 >seq133 Length=17367 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| || || || || ||||||||| | || || || | || | ||||||||||||| Sbjct 13958 TGATTCTTTGCGGCGTCGCCAATCAGACGCTCAGTTTCGTTGAAGGCAACATATGATGGA 13899 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 ||||||||||| || ||||| || || || || || ||||| || ||||| ||||| Sbjct 13898 GTTGTGCGATTGCCCTGATCGTTGGCTATGATCTCCACTTTGTTGTTCTGCCAGACACCC 13839 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| | | ||||| || | ||| || |||||||| Sbjct 13838 ACACAGGAATATGTTGTGCCCAGATCGATGCCAATAGC 13801 Score = 93.3 bits (102), Expect = 3e-13 Identities = 201/299 (67%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| ||||| || || || |||| | |||| || | || || | || Sbjct 14773 ACAAGACGATTGTCAAAGTCCTCGCCACCCAGATGTGTATCGCCGGCTGTGGCCTTCACC 14714 Query 518075 TGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 | ||| || || || |||| | | | | |||||| ||| || ||||||| | Sbjct 14713 TCGAACAGCGAGCCCTCGTCAATGGTGAGTATGGACACATCAAAGGTGCCGCCACCCAAA 14654 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTT---GGTTTTTATCAAGACCATACGCAAAA 518188 || || || | ||||| || | ||| | || || || || ||||| || ||| Sbjct 14653 TCGAAGATCAACACATTGCGCTC---GCCTTTCAGATTCTTGTCGAGGCCATAGGCCAAA 14597 Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || || || || || ||||| ||||| | | ||||| || |||||||| ||| ||| Sbjct 14596 GCTGCTGCTGTGGGCTCATTGATAATGCGTAGCACATTTAGTCCAGCAATGGATCCGGCA 14537 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 ||||| || || || | || || || || ||||| || || || || || |||||||| Sbjct 14536 TCTTTGGTTGCCTGACGCTGCGAGTCATTGAAATAAGCTGGCACTGTGATGACGGCATC 14478 >seq2972 Length=6305 Score = 98.7 bits (108), Expect = 8e-15 Identities = 205/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 ||||| || || || ||| ||||||| | ||| ||||| ||||| | |||||||| || Sbjct 343 GTTGACTTCTCCGCTGCACTCACATTCAAAATGCCATTCGCATCAATGTCAAATGTAACC 284 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || ||||| || || || | | |||| || || || | ||| | |||| | |||| | Sbjct 283 TCGATTTGGGGCACGCCACGCGGAGCCGGCGGAATGGCGGACAACTCAAATTTACCCAAA 224 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 |||| ||||| || || | ||||||||||| || | ||||| || | | Sbjct 223 ATATTGTTATCCTTGGTCATAGCACGTTCACCCTCAAACACCTGGATGAGCACACCGGGC 164 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 517482 |||||||| | ||| || ||||| | |||| | | || || || || | ||| | Sbjct 163 TGATTATCGGCATACGTGGTAAAGA-TCTGCGTCTGCTTGGTGGGTATGGTCGAGTTACG 105 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 | ||| | | ||||| | ||| || ||||| || | || || || || ||||| || Sbjct 104 TTTAATCAGCGTTGTCATCACACCGCCAGCTGTCTCAATGCCCAGCGACAGTGGAGTCAC 45 Query 517543 ATC 517545 ||| Sbjct 44 ATC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778534518030130