Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_015210.1 Length=61440 Score E Sequences producing significant alignments: (Bits) Value seq1762 174 6e-39 seq2825 145 3e-30 SEQ29447 138 4e-28 >seq1762 Length=3526 Score = 174 bits (192), Expect = 6e-39 Identities = 529/812 (65%), Gaps = 34/812 (4%) Strand=Plus/Plus Query 21336 CTGGGCAACGACGCCTCGCTCCCGGCCACCTCGGCGAGCAAGGCCGCCGCCGCGATGACC 21395 || ||||||||| | | ||| | |||||||| || | | ||||| || || ||| || Sbjct 1222 CTCGGCAACGACACTGCCCTCACAGCCACCTCCGCCTCCGACGCCGCAGCTGCCATGGCC 1281 Query 21396 GAGCTGAGCAAGGGCGGGTTCTCGGTCCAGGACTCCATGACCGCGGCGCGGGGCACCCTG 21455 |||||| ||||||||| ||||| ||| | || || ||| ||||| ||| || ||| Sbjct 1282 GAGCTGTCCAAGGGCGGCTTCTCCGTCGACGAGTCGATGGGAGCGGCCAAGGGAACGCTG 1341 Query 21456 ATCCTGgccgccgccgcgcaggtcgacgccgcgcgcgccgccgAGATCCAGTCGGACGCC 21515 || |||||||| || ||| |||| || || ||| ||| ||| |||||| | || Sbjct 1342 CAGCTCGCCGCCGCAGCACAGATCGAGGCGGCTGACGCGGCCACGATTCAGTCGCAGGCG 1401 Query 21516 CTGAACATCTTCGGGCTGAAAGCCGACTACGCCACCAAGGCCGCGGACATCCTGGCCAAC 21575 ||| | ||| ||| | || | |||| || || | ||||| || || Sbjct 1402 CTGCAGGCTTTCTCCCTGCAGGCTGGTGACGCGGCCCGGGTGTCCGACATTCTCGCAGGT 1461 Query 21576 ACCGCGAACTCGTCGTCGGTCGAGATCGAGGACGTGGCCAACTCGATGAAGTTCGCGGGC 21635 | |||||| | || || | ||||||||||| | | ||| | || || || || Sbjct 1462 GCGGCGAACGCCTCATCCGCCGAGATCGAGGGCATCGCCCAGGGCCTGCAGCAGGCCGGA 1521 Query 21636 GCGACGGCGAACACCCTCGGCATCGACATGAAGGACACGGCCGCCGCGATCGGCGTCCTG 21695 | ||||||| |||||||| ||| ||||||| || | || ||| | | Sbjct 1522 ACCGTGGCGAACCAGTTCGGCATCAGCATCGAGGACACTTCCACGGCCCTCGCAATGTTC 1581 Query 21696 GGCAACGCGGGCATCAAGGGCGAGCAGGGCGGCACCACGCTGCGCGCCGTGCTCTCGTCC 21755 | ||||||||||||| ||||| | | |||| | || | ||||| |||| Sbjct 1582 GCCAACGCGGGCATCCAGGGC--TCTG---------ACGC-GGGCACGCTGCTCAAGTCC 1629 Query 21756 ---CTGGTCGCGCCGTCGAA-----GCAAGCCAGC----ATCGCGATGGACGAACTGGGC 21803 ||| | |||| | || | ||||||| || |||||||| ||||| ||| Sbjct 1630 GCACTGCTGGCGCTGACGGACCAGGGCAAGCCCGCGCAGGCGGCGATGGAGGAACTCGGC 1689 Query 21804 CTGAGCGTGTTCGACGCCGAGGGCAAGTTCAAGGGGATGCCGGTCCTGTTCGACCAGCTC 21863 ||| |||| |||| ||||||| ||| || | |||| || ||||||||||| Sbjct 1690 CTGTCGGTGTACGACATGCAGGGCAACTTCGTTGGACTACCGGCACTCTTCGACCAGCTG 1749 Query 21864 GCCGCCGCGCAGAAGCGGATGACGCCCGAGGCGTTCGCCGCCGCCAGCG-CGACCGCGTT 21922 | ||||||||||| |||||||| ||||||| || |||| || || | | || Sbjct 1750 CAGGATGCGCAGAAGCGCATGACGCCGGAGGCGTATCAGGCGGCCACCGCCGTGCTC-TT 1808 Query 21923 CGGCCGCGAGGCGATGAACTTCGCCGCCATCGCTGCGCAGAACGGGGCCGAGGGCTTCAA 21982 |||| || || ||| | | |||| ||||| ||| || | ||| |||||||||||| Sbjct 1809 CGGCTCTGACGCCATGCGCCTGGCCGGCATCGGCGCGGAGCAGGGGAGCGAGGGCTTCAA 1868 Query 21983 CAAGATGGCCGTCGCGGTCGACGAGAACGGGTCGGCGATGCGTCTCGCGGAGACGCAGAT 22042 |||| || | |||| | | |||| |||| |||||| | |||| Sbjct 1869 CAAGCTGAAGGAGCAGGTCACCCGGTCCGGGCAGGCGGCAGAGGTCGCGGCAGCCCAGAC 1928 Query 22043 GCAGGGCCTACCCGGCGCGTGGGAGGGCCTTCAGAACTCGATCGAG----TCCGTGCAGC 22098 |||||||| ||||| ||| |||| | |||||| | |||| || || | Sbjct 1929 CCAGGGCCTTCCCGGAGCGCTGGAGCGGGCGCAGAACGCCGCCGAGGATCTCGGT----C 1984 Query 22099 TCACGATCTACGACCTGATCAAGGGGCCGCTG 22130 | | |||||||||| | | |||||||||||| Sbjct 1985 TGAAGATCTACGACGCGGTGAAGGGGCCGCTG 2016 >seq2825 Length=19190 Score = 145 bits (160), Expect = 3e-30 Identities = 417/635 (66%), Gaps = 36/635 (6%) Strand=Plus/Minus Query 45318 GCCGTCCTCGTCGACCGCCTGGCGCGGAGCCTTGGCGTCGAGCTGGCTCAGGTTCACCAG 45377 ||| || ||||||| | ||||| | |||| ||||| ||||||| ||||| | | || Sbjct 6798 GCCCTCGTCGTCGAACTCCTGGGTCTCGGCCTCGGCGTAGAGCTGGGTCAGGGTGGCGAG 6739 Query 45378 CTTCATGTGCCGCGCCGAGC----CGGACAGGTCGAGCACCAGCGCGTCGGTCTTG---- 45429 ||| ||| ||| |||| ||| ||||||| ||||| |||||||||||| Sbjct 6738 TTTCTTGT----CGCGGAGCATCCCGGTGAGGTCGATGACCAGTGCGTCGGTCTTGTCCT 6683 Query 45430 ---------CCGGG-----GTAGAGCCGGAGCGCGCGGCCGACCATCTGCGTGTACAGGT 45475 ||||| |||||| |||| | || ||||| || |||| | | || Sbjct 6682 GTCCGGTGTCCGGGTCGGTGTAGAGACGGACGCCACGTCCGACAATTTGCGCGAAAAGTA 6623 Query 45476 TGCGTGAGCGCGTCGGCCGCGCGAGCACGACGGCGTCGCACATCGGGAAGTCCGCGCCCT 45535 | ||| | || || || || |||||||| ||| || |||||||||||||||| Sbjct 6622 CGTCTGACCTGGTAGGACGTGCCAGCACGACACAGTCACAGCGGGGGAAGTCCGCGCCCT 6563 Query 45536 CGGTGAGCACCTGCACGGTGACCAGGAACCGGGTCGTCCCGGCCCGGAACCGGTCGTACA 45595 |||||||||||||||| ||||||| | |||| | ||| |||||| || ||| | Sbjct 6562 CGGTGAGCACCTGCACAGTGACCATGGCCCGGATTTCGCCGCTGCGGAACTGGCGGTAGA 6503 Query 45596 CGGCCTGGCGATCCTCGT--CCGGGGTTGCGCCCACGACGACCTCGGCGGCGAGCCCAGC 45653 |||| || ||| | | | | || ||| | || ||||| | || |||| || Sbjct 6502 TTTCCTGCCGCTCCGCCTTGCTGTGGCTGC-CGGACACCGACCGGGTGGGGTAGCCGCGC 6444 Query 45654 GGCCGTCATGGCCTCGGCGAGAACGT-ACGCGGCATCGACTCCGGCGGCGAAGACGATCG 45712 || || | | |||| || | | | | || ||||| ||||||||| ||||| Sbjct 6443 -GCGGTGAGCTCGGCGGCCAGCTCCTCGCCCTGC-TCGACGGACACGGCGAAGATGATCG 6386 Query 45713 CGCGCCGGTCGGCGGCGTGCTTGCTGACGGCCTCCACGACGTAGTCGG--TCGCCGCCTC 45770 | |||||||||||||| | ||||| || ||| || ||||| ||| || Sbjct 6385 GGACGCGGTCGGCGGCGTGGCGGAGCACGGCGTCGACG--GTGGTCGGGATCGAGGCACG 6328 Query 45771 CATGACCTCGGCGAGTTCGGTCTGCTGGAAGTCGCCCGCGACGGTGCGGATGTCGTTCAG 45830 |||||||||| | || |||| ||| | | |||| || |||| || ||| | || Sbjct 6327 CATGACCTCGTCCAGGTCGGACTGTTTGTAGTCTCCGCCGACCGTCTTGATCCGGGCGAG 6268 Query 45831 CTTGTCCAGCCCGGCGATGCGCACCGTGAGGCCGCGGGGCTGCACCAGGTAGCCCTCGTC 45890 || ||| || || ||| || || ||||||||| | || ||| | || | ||| Sbjct 6267 GAGGTTCAGGTGCTCGGTGACCACGGTCAGCCCGCGGGGCGGGACGAGGAACCCGTTGTC 6208 Query 45891 GATGGCCCAGCGCAGATCCTTCTCGTAGGCGATCG 45925 ||| ||||| ||| || |||| ||||||||| Sbjct 6207 GATCGCCCACTTCAGGTCGCGCTCGAAGGCGATCG 6173 >SEQ29447 Length=7397 Score = 138 bits (152), Expect = 4e-28 Identities = 194/269 (72%), Gaps = 15/269 (6%) Strand=Plus/Minus Query 23730 AAGCCCATCAACTTCATGATCGGCACCGTCTACAACAACGGCATCCGCAAGGCGTGGAAC 23789 ||||| ||||||||||||||| | ||||||||||| |||||||| ||| ||||||||| Sbjct 7363 AAGCCGATCAACTTCATGATCAACTCCGTCTACAACGCCGGCATCCTCAATGCGTGGAAC 7304 Query 23790 ACGGTGGCGAAGTTCCTGCCCGACGTGAA----GGAAGCTCCCGAGCTAGGGCTGATCCC 23845 || | ||||||||| | |||| |||| | |||| ||| ||| ||| ||||| Sbjct 7303 ACCGGCGCGAAGTTCATCCCCGGGCTGAATGAGGCAAGCCCCCTGGCT--GGC--ATCCC 7248 Query 23846 CGAGTACCACCGCGGCGGCACGATCAAGGGGCCGCGAGGCCGC------GACAACGTGCT 23899 |||| || | ||| || ||||| || ||| | | | || ||| | ||||| Sbjct 7247 CGAGCACGCCAACGGTGGTGCGATCCGCGGTCCGGGCGACGGCACCTCGGACGATGTGCT 7188 Query 23900 CATGTGGGGCGAGCACGGCGAGCACATGCTGACCACCGCGGACGTGGCGGCGATGGGCGG 23959 |||||||||| |||||||||||||||| ||| | ||||| || | || | ||||| Sbjct 7187 CATGTGGGGCTCCAACGGCGAGCACATGCTCACCGCGGCGGAGGTCGACGCTCTCGGCGG 7128 Query 23960 GCACGACTCGATCTACGCGATGC-GCGCC 23987 ||| | | | ||||| |||| ||||| Sbjct 7127 GCAGGGTGCCGTGTACGCCATGCGGCGCC 7099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196378824310020