Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2872 250 3e-61 seq61 224 1e-53 >seq2872 Length=9359 Score = 250 bits (276), Expect = 3e-61 Identities = 562/838 (67%), Gaps = 10/838 (1%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 |||||||| |||||||| | ||| | || || ||||| || ||||| || || || Sbjct 2978 ACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAA 3037 Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 || || ||| ||||| || |||||||| ||| || || || || | ||| | Sbjct 3038 GAGAT-CATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAG 3096 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 || | | ||| | ||| || ||||| | |||||| | ||||| | |||| ||||| Sbjct 3097 CTCAACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCAT 3156 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || || || || || || ||||| || || || || || || ||| | || || || Sbjct 3157 GCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATC 3216 Query 18900 TGATATAATAGATACAACTCTATCTTC---ATTAGGAGGGTATAGAAGATGTTTAAACAT 18956 | ||| || | ||| | ||| | |||| | | | | ||||| ||||| Sbjct 3217 CGTTATGAT---TTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT 3273 Query 18957 CAAACAT-GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 || || ||||| |||||||| || || || || | | |||||||| || || |||| Sbjct 3274 -AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATG 3332 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | |||||||| ||||| | || || | |||||| || || ||||| ||| | Sbjct 3333 TAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGA 3392 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 |||| || ||||| || || |||||||||| | | ||| ||| | | ||| | || Sbjct 3393 AGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCG 3452 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | ||||| || ||||| || |||||| || ||| ||||| || || || | Sbjct 3453 AAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGG 3512 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| || ||||| |||| || | ||| | | ||| | || || | | ||||| Sbjct 3513 CATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGT 3572 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| ||||| | ||| || || || ||||| || || ||||| || | ||| || | Sbjct 3573 ACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGG 3632 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | | ||| ||||| | ||| | |||||||| |||||| ||||| ||||||||| || Sbjct 3633 TCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAG 3692 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || || || ||||| || ||||| |||| || | | || Sbjct 3693 CAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCC 3752 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | || || || || | ||| |||||||| || ||||| || || || || || Sbjct 3753 AATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 3810 >seq61 Length=55249 Score = 224 bits (248), Expect = 1e-53 Identities = 1154/1843 (63%), Gaps = 16/1843 (1%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||||| || | ||||||||| || ||||| | ||| |||| ||||| Sbjct 27978 GCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAGAAA 27919 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 || || ||||| || || | ||||| | || ||||| || | ||||||||| Sbjct 27918 TGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGACTC 27859 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 || |||||||| ||||| | |||||||||||| | | | | | | || ||| Sbjct 27858 TGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCACCGAGATTTCC 27799 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATTAG-TATTTTGAATAGAT 47240 || || ||||| |||| | | || | || | |||| | | ||||| || || Sbjct 27798 CAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTTTTGTATGGAG 27739 Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300 || | | | || |||| || || | |||| ||| | | | |||| ||||| Sbjct 27738 CCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCTAGTTCGGTTAAA 27679 Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360 || | |||| |||| || | | || ||||| || | || | | | | || Sbjct 27678 TCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAA 27619 Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420 || || ||||| || || | || |||||||| || | || || ||||| ||||| Sbjct 27618 ATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCC 27559 Query 47421 GTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 || ||||| | || || || ||| | ||||| || |||| | || || | Sbjct 27558 GTGGGCATTGGAGCTAC-AAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTT 27500 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||||||||| || || | ||| | ||| || || ||||| Sbjct 27499 TAGAGCAGTCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAAT 27440 Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||| || || | |||| ||||| || |||| ||| ||||||| || ||| || || Sbjct 27439 TCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTC 27380 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG-ATTCC 47658 |||||| || || | |||| ||| || || ||||| || || | || || | | | Sbjct 27379 ACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC 27320 Query 47659 TTGCTTCTGATGAT-TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGA 47717 |||| || | ||| | ||| | || | || || || || ||| Sbjct 27319 G-GCTT-TGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 27262 Query 47718 ACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATAT 47777 || ||||| ||||| || | ||| || ||| || || || || || | ||||| Sbjct 27261 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 27202 Query 47778 TTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT 47837 | || ||||| || ||||| || | | || ||| | | | Sbjct 27201 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGT 27142 Query 47838 TTATTAAAATCAAACTTGTTATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGA 47894 || || ||||| || | || | | | |||||| |||| | ||||| ||||| | | Sbjct 27141 TTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAA 27082 Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 || || || || | ||||| || | ||||| | ||||||| || || || | Sbjct 27081 TTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTG 27022 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 |||||||| || || | ||| || ||||| | |||| || | ||||||| | ||| Sbjct 27021 CATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGC 26962 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || ||||| || | |||||||||| || | | ||||| ||| || Sbjct 26961 ATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCT 26902 Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134 || || ||| | || | || ||||| || ||||| | ||||||||| ||| Sbjct 26901 TTAATCACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCA 26842 Query 48135 TCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCA 48194 ||||| | || | || || || ||||| | | |||||||| || |||||||||||| Sbjct 26841 TCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCA 26782 Query 48195 TCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTA 48254 | | || | ||||||| | ||| |||||||| | || || | ||| | | Sbjct 26781 TTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGA 26722 Query 48255 GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCA 48314 | ||| | ||||| ||||| | ||| |||| || || | || || | ||||| | | Sbjct 26721 GCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAA 26662 Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374 ||||| ||||| | || || || | | |||||||| || || |||||||| | | Sbjct 26661 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACA 26602 Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434 || | || ||| ||| | ||||| | ||| || || | ||||||||| | ||||| Sbjct 26601 TAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTA 26542 Query 48435 GTTCCCGAAATATAACTTCCACTAGCTC--TTATATTACTAATTGAAATACCTATACCAC 48492 || || | || | | || | || | || | | | |||| | || || |||| Sbjct 26541 GTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTG--AGCCCAATGCCAC 26484 Query 48493 CTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTAT 48552 | || ||| || || | |||||| | | | || | |||| ||||| || || Sbjct 26483 CAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAAT 26424 Query 48553 CATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA 48612 | | ||| |||| || ||||| ||||| || ||| || || | | | || Sbjct 26423 CGGAAACCATTGTTAAAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAA 26364 Query 48613 ATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAA 48672 |||| ||||| |||||||| |||| | || ||||||| || || || || | | Sbjct 26363 ATAACGTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAG 26304 Query 48673 CAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732 | ||||| || || ||| || || || | || | ||| | ||| | || || | Sbjct 26303 CGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGAC 26244 Query 48733 TTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAA 48792 ||| | |||||| ||| || || | | ||| || || | || || || |||| Sbjct 26243 GTTCGGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAA 26184 Query 48793 AATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 |||||||||| ||| || ||||| || || | ||| || Sbjct 26183 AATAGTTGTAGCCAAAATCACGATCATAGATGATCGCTGAGTT 26141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561784849672200