Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20]
46,105 sequences; 137,224,182 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2872 250 3e-61
seq61 224 1e-53
>seq2872
Length=9359
Score = 250 bits (276), Expect = 3e-61
Identities = 562/838 (67%), Gaps = 10/838 (1%)
Strand=Plus/Plus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
|||||||| |||||||| | ||| | || || ||||| || ||||| || || ||
Sbjct 2978 ACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCAAA 3037
Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779
|| || ||| ||||| || |||||||| ||| || || || || | ||| |
Sbjct 3038 GAGAT-CATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACTCCAAG 3096
Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839
|| | | ||| | ||| || ||||| | |||||| | ||||| | |||| |||||
Sbjct 3097 CTCAACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCAT 3156
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| || || || || || || ||||| || || || || || || ||| | || || ||
Sbjct 3157 GCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCATC 3216
Query 18900 TGATATAATAGATACAACTCTATCTTC---ATTAGGAGGGTATAGAAGATGTTTAAACAT 18956
| ||| || | ||| | ||| | |||| | | | | ||||| |||||
Sbjct 3217 CGTTATGAT---TTCAATGATGCGTTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT 3273
Query 18957 CAAACAT-GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015
|| || ||||| |||||||| || || || || | | |||||||| || || ||||
Sbjct 3274 -AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATG 3332
Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075
| | |||||||| ||||| | || || | |||||| || || ||||| ||| |
Sbjct 3333 TAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGA 3392
Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135
|||| || ||||| || || |||||||||| | | ||| ||| | | ||| | ||
Sbjct 3393 AGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTCG 3452
Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195
| ||||| || ||||| || |||||| || ||| ||||| || || || |
Sbjct 3453 AAGAGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGG 3512
Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255
||| || ||||| |||| || | ||| | | ||| | || || | | |||||
Sbjct 3513 CATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACTGT 3572
Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315
||||||| ||||| | ||| || || || ||||| || || ||||| || | ||| || |
Sbjct 3573 ACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTCGG 3632
Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375
| | ||| ||||| | ||| | |||||||| |||||| ||||| ||||||||| ||
Sbjct 3633 TCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGAAG 3692
Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435
| ||||| || || || ||||| || ||||| |||| || | | ||
Sbjct 3693 CAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGCCC 3752
Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||||| | || || || || | ||| |||||||| || ||||| || || || || ||
Sbjct 3753 AATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 3810
>seq61
Length=55249
Score = 224 bits (248), Expect = 1e-53
Identities = 1154/1843 (63%), Gaps = 16/1843 (1%)
Strand=Plus/Minus
Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063
|||| ||||| || | ||||||||| || ||||| | ||| |||| |||||
Sbjct 27978 GCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAGAAA 27919
Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123
|| || ||||| || || | ||||| | || ||||| || | |||||||||
Sbjct 27918 TGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGACTC 27859
Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183
|| |||||||| ||||| | |||||||||||| | | | | | | || |||
Sbjct 27858 TGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCACCGAGATTTCC 27799
Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATTAG-TATTTTGAATAGAT 47240
|| || ||||| |||| | | || | || | |||| | | ||||| || ||
Sbjct 27798 CAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTTTTGTATGGAG 27739
Query 47241 CCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaat 47300
|| | | | || |||| || || | |||| ||| | | | |||| |||||
Sbjct 27738 CCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCTAGTTCGGTTAAA 27679
Query 47301 gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATAT 47360
|| | |||| |||| || | | || ||||| || | || | | | | ||
Sbjct 27678 TCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAA 27619
Query 47361 ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCT 47420
|| || ||||| || || | || |||||||| || | || || ||||| |||||
Sbjct 27618 ATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCC 27559
Query 47421 GTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479
|| ||||| | || || || ||| | ||||| || |||| | || || |
Sbjct 27558 GTGGGCATTGGAGCTAC-AAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTT 27500
Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
||||||||||||| || || | ||| | ||| || || |||||
Sbjct 27499 TAGAGCAGTCCAATCCCAAAGGCTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAAT 27440
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
||| || || | |||| ||||| || |||| ||| ||||||| || ||| || ||
Sbjct 27439 TCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTC 27380
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG-ATTCC 47658
|||||| || || | |||| ||| || || ||||| || || | || || | | |
Sbjct 27379 ACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC 27320
Query 47659 TTGCTTCTGATGAT-TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGA 47717
|||| || | ||| | ||| | || | || || || || |||
Sbjct 27319 G-GCTT-TGTCACTCTCATAGGGAAAACGCATCAGAATTAAGGCGTCGGCAAAGCCCTGA 27262
Query 47718 ACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATAT 47777
|| ||||| ||||| || | ||| || ||| || || || || || | |||||
Sbjct 27261 ACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAG 27202
Query 47778 TTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT 47837
| || ||||| || ||||| || | | || ||| | | |
Sbjct 27201 TAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTCAGT 27142
Query 47838 TTATTAAAATCAAACTTGTTATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGA 47894
|| || ||||| || | || | | | |||||| |||| | ||||| ||||| | |
Sbjct 27141 TTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAA 27082
Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954
|| || || || | ||||| || | ||||| | ||||||| || || || |
Sbjct 27081 TTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCAGTGCAGAGGTTGCTG 27022
Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014
|||||||| || || | ||| || ||||| | |||| || | ||||||| | |||
Sbjct 27021 CATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCCTTGAAGAGC 26962
Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074
|| | || || ||||| || | |||||||||| || | | ||||| ||| ||
Sbjct 26961 ATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAAGAGTTTGTGCT 26902
Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134
|| || ||| | || | || ||||| || ||||| | ||||||||| |||
Sbjct 26901 TTAATCACACGATTTGCGCGACCCTCGCTCTCGTACTTTGTATACAGCTTCTCAAAGTCA 26842
Query 48135 TCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCA 48194
||||| | || | || || || ||||| | | |||||||| || ||||||||||||
Sbjct 26841 TCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCA 26782
Query 48195 TCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTA 48254
| | || | ||||||| | ||| |||||||| | || || | ||| | |
Sbjct 26781 TTGGCCTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGA 26722
Query 48255 GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCA 48314
| ||| | ||||| ||||| | ||| |||| || || | || || | ||||| | |
Sbjct 26721 GCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAA 26662
Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374
||||| ||||| | || || || | | |||||||| || || |||||||| | |
Sbjct 26661 TGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGTCGCTTGCCGCCACCTTGATCGACA 26602
Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434
|| | || ||| ||| | ||||| | ||| || || | ||||||||| | |||||
Sbjct 26601 TAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTA 26542
Query 48435 GTTCCCGAAATATAACTTCCACTAGCTC--TTATATTACTAATTGAAATACCTATACCAC 48492
|| || | || | | || | || | || | | | |||| | || || ||||
Sbjct 26541 GTGCCACAGATCGAGGTGCCCTTGGCACGAATACAATGCACATTG--AGCCCAATGCCAC 26484
Query 48493 CTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTAT 48552
| || ||| || || | |||||| | | | || | |||| ||||| || ||
Sbjct 26483 CAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGATGGAAT 26424
Query 48553 CATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA 48612
| | ||| |||| || ||||| ||||| || ||| || || | | | ||
Sbjct 26423 CGGAAACCATTGTTAAAAGGAAACACGATGACATCTGGGGACGATTGGTGGCAGCAGCAA 26364
Query 48613 ATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAA 48672
|||| ||||| |||||||| |||| | || ||||||| || || || || | |
Sbjct 26363 ATAACGTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAG 26304
Query 48673 CAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTC 48732
| ||||| || || ||| || || || | || | ||| | ||| | || || |
Sbjct 26303 CGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGAC 26244
Query 48733 TTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAA 48792
||| | |||||| ||| || || | | ||| || || | || || || ||||
Sbjct 26243 GTTCGGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAA 26184
Query 48793 AATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835
|||||||||| ||| || ||||| || || | ||| ||
Sbjct 26183 AATAGTTGTAGCCAAAATCACGATCATAGATGATCGCTGAGTT 26141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561784849672200
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