Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value SEQ12831 131 1e-24 seq133 111 1e-18 SEQ10860 100 2e-15 SEQ20784 98.7 8e-15 >SEQ12831 Length=1974 Score = 131 bits (144), Expect = 1e-24 Identities = 364/551 (66%), Gaps = 12/551 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| || || || ||||| || || || ||||| | || | || || Sbjct 32 GCTATTGGTATTGACTTGGGCACCACGTACTCGTGCGTCGGTGTGTTCCAGCACGGCAAG 91 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || ||||||||||| || || ||||| | ||||| Sbjct 92 GTGGAGATCATAGCCAACGACCAGGGTAACAGAACGACGCCCAGCTATGTGGCATTCACA 151 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || | || || | || || || || || | |||| ||| || ||||| | Sbjct 152 GACTCGGAGAGGTTGATCGGAGACGCGGCCAAGAACCAAGTGGCCA-TG--AATCCAAAG 208 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || | | | || ||||| |||||||| |||||| | | || |||| |||| ||||| Sbjct 209 AACAGTCTGTTCGATGCGAAACGTTTGATTGGACGCAAGTTCGATGACTCGAAGATTCAG 268 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | ||||||||||| ||||| |||||| | || || | | ||| || || | || Sbjct 269 GAGGATATGAAGCACTGGCCATTCCAAGTGGTCAACGACTGTGGCAAGCCAAAGATGAGC 328 Query 550289 GCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | ||| | ||| | | || | |||| | || || | || || ||||| Sbjct 329 GTTGAGTTCAAGGGGGAGCAG--AAGCGATTTGCCCCTGAGGAGATCAGCTCAATGGTGC 386 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTA 550405 | | || ||||| | ||||| || | | ||| || | | | || || || Sbjct 387 TCACCAAGATGAAGGAGACAGCTGAGGCGTAT-CTGGGCAGCTCGATCAAAGACGCGGTG 445 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || ||||| ||||| || || || || || || ||||| ||||||||||| Sbjct 446 ATCACAGTGCCAGCGTATTTCAACGATTCGCAGCGGCAGGCTACGAAAGATGCTGGTGCC 505 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| | ||||| || || ||||| |||||||| || || || || || || ||| Sbjct 506 ATTGCTGGGTTGAATGTGCTGCGCATTATAAATGAACCGACAGCGGCAGCTCTGGCCTAT 565 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 566 GGGCTGGACAA 576 >seq133 Length=17367 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 14477 GGATGCCGTCATCACAGTGCCAGCTTATTTCAATGACTCGCAGCGTCAGGCAACCAAAGA 14536 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| ||||||||||| ||||| || || ||||||||||| || || || || || Sbjct 14537 TGCCGGATCCATTGCTGGACTAAATGTGCTACGCATTATCAATGAGCCCACAGCAGCAGC 14596 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 14597 TTTGGCCTATGGCCTCGACAA 14617 >SEQ10860 Length=7223 Score = 100 bits (110), Expect = 2e-15 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 563280 ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGC 563339 ||| | ||||| ||||||||||| | ||||| | |||||| | ||| || ||||| Sbjct 1488 ACTCTTTTTGG--ATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGC 1545 Query 563340 AAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTAC 563399 ||| || | | || ||||| ||||||||||||||||| || ||||| || ||| || Sbjct 1546 AAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGAC 1605 Query 563400 TGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTT 563457 ||||| ||||| | || | || || ||||| | || ||||| || || ||| Sbjct 1606 ATTTTCAATGGTATCCGACGGTTCG-AC-CTCAAGAGTGATGGTCTTACCCGTGAGGGTT 1663 Query 563458 TTAACGAAAATTTGCAT 563474 |||||||| |||||||| Sbjct 1664 TTAACGAAGATTTGCAT 1680 >SEQ20784 Length=8807 Score = 98.7 bits (108), Expect = 8e-15 Identities = 200/292 (68%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 550214 GATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA 550273 ||||| |||| ||| | || |||||||| ||||| ||| | | || | ||| ||| Sbjct 8807 GATTCCGCTGTCCAGTCGGACATGAAGCACTGGCCCTTCGAGGTCGTCAGCGTTGATGGC 8748 Query 550274 AAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAAT 550332 || || | ||||| | || | |||||| | || | || | || || | || Sbjct 8747 AAGCCCAAGATTGAGGTCACCTAC-AAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGAT 8689 Query 550333 TTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AG 550391 || || ||||| || | |||||||| | || ||| || | | | || ||||| || Sbjct 8688 CTCCTCCATGGTGTTGACCAAAATGAAGGAGACCGCCGAGGCCTATCTGGG-CAAGACAG 8630 Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 | || |||| || || ||||| || || || || || |||||||| ||||| || || | Sbjct 8629 TGACCAATGCTGTCATCACTGTGCCTGCTTACTTCAACGACTCACAGCGTCAGGCGACCA 8570 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 | |||||||| ||||| || || ||||| | |||||||||||||| || Sbjct 8569 AGGATGCTGGTACCATTGCCGGTCTGAATGTGTTGCGTATTATCAATGAGCC 8518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026857759666450