Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_016652.1 Length=49330 Score E Sequences producing significant alignments: (Bits) Value SEQ26708 188 2e-43 SEQ29447 143 8e-30 SEQ27525 80.6 8e-11 >SEQ26708 Length=5696 Score = 188 bits (208), Expect = 2e-43 Identities = 243/333 (73%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 16470 CGGTGGTGTCGTGGACTCGATCTCAGGTTTGGTTCGCGAGCACTTCCCGATGATGTCGAT 16529 |||||| || |||||| ||| || | || |||| |||||||||||||| |||| Sbjct 355 CGGTGGCGTGGTGGACAGCATCATCGGGCTCGTCAACGAGAACTTCCCGATGATGACGAT 414 Query 16530 CACCTCGACATTCCGGAACACGAACGATCATCACGGATCCGGGCTGGCCGTAGACTTCTC 16589 |||||| || | |||||| ||||| | ||||| ||| |||||| ||| ||| Sbjct 415 CACCTCCACGACCAGGAACAGCAACGACCTCCACGGGCAGGGGAAGGCCGTCGACGCCTC 474 Query 16590 GAACGGCACCGACTCGACACCGGAGATGCGTGGGGCGGCACAGTGGTTCCACGACAACTA 16649 |||||| |||| || || ||||||| ||| ||||||||| ||||| ||| Sbjct 475 CAACGGCTACGACGACACCCCCGAGATGCAGTCCATGGCGCAGTGGTTCTACGACCGCTA 534 Query 16650 -CGGTCCGCAACTGCTCGAGCTGATCCACTCACCGTTCGACGGCAACATCAAGAACGGGC 16708 | || | || || ||||||||||||||| ||||||| | |||| | ||||||||| Sbjct 535 CCAGTAC-CAGCTCGCCGAGCTGATCCACTCCCCGTTCGGCAACAACGTGAAGAACGGGG 593 Query 16709 AGGACGTCGGCGACGGATTCGGCTTCTACGGAGCCGGGACGATGGGCCAGCACCGCAACC 16768 | ||||||||||||| | ||||||||||| || | || ||| |||||||||||||| Sbjct 594 ACAACGTCGGCGACGGCATGGGCTTCTACGGGGCGGACACCATGTCCCAGCACCGCAACC 653 Query 16769 ACGTGCACGTCGCGGCAGCGTCTCCACTCGGCG 16801 |||| ||| |||| || | |||| |||| || Sbjct 654 ACGTCCACATCGCCGCCCAGGCTCCCCTCGACG 686 >SEQ29447 Length=7397 Score = 143 bits (158), Expect = 8e-30 Identities = 251/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 17080 GAGGCGTACGTCTCGGAGATCGTTCGAGCAGCCAAGGACCGCTCGCTGGGCAAGGAGGGT 17139 ||||||||||||| | |||||| | || || |||| | | || | || || Sbjct 5716 GAGGCGTACGTCTATGGGATCGTGCAGGCCGCGCAGGATCACAGTCTTCCCGCGGCTGGC 5657 Query 17140 GCGACTATCGGCGTGGCGACAGCCATTGTCGAGTCCG----CCC--TGCGGATGTATGCG 17193 || || || |||||||| || | || ||||| | ||| || |||||| || Sbjct 5656 GCCCGGATTGGTGTGGCGACGGCACTGGTGGAGTCGGGTGACCCGATGAAGATGTACGCC 5597 Query 17194 A---ATGCCGGGGTACCGGATTCGCTGTCCTACCCTCACGAGGCCGTCGGTTCAGATCAC 17250 | |||| ||| ||||| |||||| |||||| ||||| || |||| || || Sbjct 5596 AGCAATGC---GGTTCCGGAGTCGCTGAACTACCCGCACGACGCGATCGGGAGCGACCAT 5540 Query 17251 GACTCTGTCGGCTTGTTCCAGCAGCGCCAGGCAGGATGGGGCACCCTCACGGAGCGGATG 17310 || || |||| ||||||||||||| ||||| || ||||||||| || | |||| ||| Sbjct 5539 GATTCCATCGGTCTGTTCCAGCAGCGTCAGGCCGGGTGGGGCACCGTCGCACAGCGTATG 5480 Query 17311 AACCCGTACGGTTCCGCAGCCCTGTTCTTCAACGCCATGACGCGCAAGTTCCCGAACTGG 17370 | ||| ||| || | |||| ||| ||| ||| ||| ||||||||||||||| Sbjct 5479 GATCCGCACGACAGTGCGTCGATGTTTTTCGCCGCGATGCTGCGGAAGTTCCCGAACTGG 5420 Query 17371 CGGGACATGGACCCGGGTGCGGTGGCACAGGGCGTCCAGGTGTCCGCCTTCCCGGATCGC 17430 | | |||||||| || || ||||| ||||| || ||||| || || || ||||| || Sbjct 5419 CAGTCGATGGACCCCGGCGCCGTGGCGCAGGGTGTGCAGGTCTCGGCATTTCCGGACCGG 5360 Query 17431 TAC 17433 ||| Sbjct 5359 TAC 5357 >SEQ27525 Length=13899 Score = 80.6 bits (88), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 2810 AGGCGATCGACTACCAGGACAAGCAGATCGCGCTGGCTGGTCTGGCGCACTTCCTCAACC 2869 ||||||||| |||||| ||| | ||| ||| ||| | |||||||||||||| |||| Sbjct 9808 AGGCGATCGCCTACCACGACTCGATGATGGCGAAGGCGGTGCTGGCGCACTTCCTGAACC 9749 Query 2870 TCGA---CCGTGGAGGGTCGCACGCGCTGGCCACGGTCCTGGAGGACCCGTTCACGCAGT 2926 | || | || || || |||| ||||| | || | ||| | ||||| |||| Sbjct 9748 TTGAGGGCAAGGGCGGCTCCTACGCCCTGGCGGAGACCCAGTCGGATCTGTTCATCCAGT 9689 Query 2927 CGGTTCAGACGCTCGCTGAAACCATCGCCGACATCGGCACAGCTCACGTCGTCGAGGACC 2986 || | ||||| |||| || || || |||| || ||| ||| |||| || |||| Sbjct 9688 CGCTGCAGACCATCGCGGACTGGATAGCGGACACCGCCACCCAGCACATCGTGGAAGACC 9629 Query 2987 TCGTTGAC 2994 |||||||| Sbjct 9628 TCGTTGAC 9621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157648040908920