Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20nasuta_20[genbank_20GCA_5F002222885.1_202017-07-20] 46,105 sequences; 137,224,182 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value SEQ36764 158 4e-34 SEQ26708 136 1e-27 SEQ29893 95.1 4e-15 >SEQ36764 Length=622 Score = 158 bits (174), Expect = 4e-34 Identities = 143/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| | |||| |||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 428 ACGGGACGCTGTCCTGCCAGCTCTACCAGCGCAGCGCGGACATGTTCCTCGGCGTGCCGT 369 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| ||||||||||| |||||| | ||||| | ||| || ||| ||| Sbjct 368 TCAACATCGCCTCCTACGCGCTGCGGACCCACATGTTCGCCCAGCAGGCGGGCCTGGAGG 309 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||||||| | | | ||||||||||||||| |||| | || | |||| |||| |||| Sbjct 308 TCGGCGAGTGCGTGTGGACCGGCGGCGACTGCCACATCTACGACATCCACCTCGACCAGG 249 >SEQ26708 Length=5696 Score = 136 bits (150), Expect = 1e-27 Identities = 192/266 (72%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 41662 AACGACTACCACGGCCAGGGCAAGGCGGTGGACTTCTCGAACGGCGGCGACGCCGGTACA 41721 |||||| |||||| ||||| ||||| || ||| ||| |||||| ||||| | || Sbjct 437 AACGACCTCCACGGGCAGGGGAAGGCCGTCGACGCCTCCAACGGCTACGACGAC---ACC 493 Query 41722 CCGGAAATGATGGCCTTCGCGAACTGGATCGCGGACACCTGGG-GTGCTAACACGCTCGA 41780 || || ||| | || | ||| | ||| || ||| || || | | | ||| ||| Sbjct 494 CCCGAGATGCAGTCCATGGCGCAGTGGTTCTACGACCGCTACCAGTACCAGCTCGC-CGA 552 Query 41781 GCTGATCCACAGCCCGTTCGGACGGAACATCAAGGACGGCAACAGCGTCGGCGACGGCAT 41840 |||||||||| ||||||||| ||| | ||| |||| ||| ||||||||||||||| Sbjct 553 GCTGATCCACTCCCCGTTCGGCAACAACGTGAAGAACGGGGACAACGTCGGCGACGGCAT 612 Query 41841 GGGGTTCTACGGGGCAGGCACGATGGCCCAGCACAGGAACCATGTCCACTGGGCAGTCGA 41900 ||| ||||||||||| | ||| ||| |||||||| | ||||| |||||| || | | | Sbjct 613 GGGCTTCTACGGGGCGGACACCATGTCCCAGCACCGCAACCACGTCCACATCGCCGCCCA 672 Query 41901 CCGCCCCCTCAA---CGAGGACGAGG 41923 |||||| | ||||||||||| Sbjct 673 GGCTCCCCTCGACGGCGAGGACGAGG 698 >SEQ29893 Length=4967 Score = 95.1 bits (104), Expect = 4e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 26273 TCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCG 26332 ||||||| |||||||| |||| |||||| |||||||||||||||||| ||| | |||| Sbjct 2006 TCGCCCAGTGCGAGTCCACCGGCAACTGGGCCATCAACACCGGCAACGGTTTCAAGGGCG 1947 Query 26333 GCCTGCAGTTCACGCAGTCCACCTGGGACG 26362 |||| |||||||| | || ||||||| || Sbjct 1946 GCCTCCAGTTCACCGACTCGACCTGGGCCG 1917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164082915905040